Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B16
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40768| Best HMM Match : TM_helix (HMM E-Value=7.7)                  29   2.1  
SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)                 28   4.9  
SB_48463| Best HMM Match : Extensin_2 (HMM E-Value=0.075)              28   4.9  
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)                 27   6.5  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)              27   8.6  
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)                 27   8.6  
SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)             27   8.6  
SB_30246| Best HMM Match : IspA (HMM E-Value=0.39)                     27   8.6  
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)            27   8.6  
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_40768| Best HMM Match : TM_helix (HMM E-Value=7.7)
          Length = 122

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +1

Query: 67  SIITLIIIQARFTWWTIVVYHRTAIVTTLFLRTRILSSLIHQTVLAEI 210
           +IIT +II    T  TI+    T I+TT+ + T I++++I  T++  I
Sbjct: 51  TIITTVIIIITITIITIITTIITTIITTITIITTIITTII-TTIITTI 97


>SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)
          Length = 769

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 225 TGPAFVDFYHPNYPPER 275
           T  AF D  +PN+PPER
Sbjct: 114 TNEAFFDLLNPNFPPER 130


>SB_48463| Best HMM Match : Extensin_2 (HMM E-Value=0.075)
          Length = 361

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 198 PSGNYEPISTGPAFVDFYHPNYPPERYDY 284
           P+  Y+ I T PAFV  Y   +P   YDY
Sbjct: 38  PATVYDYIETHPAFVCDYMETHPTTVYDY 66



 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 198 PSGNYEPISTGPAFVDFYHPNYPPERYDY 284
           P+  Y+ I T PAFV  Y   +P   YDY
Sbjct: 137 PAIVYDYIETHPAFVCDYMETHPTTVYDY 165


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = +3

Query: 51  NRVHVVDHNPDYNPGQVHVVDNSGVP---SDGNSDHVVLANPDPFFSH-PSNGPS 203
           N ++ V H PD +P  VH+ D    P    D  S  V   +  P   H P N PS
Sbjct: 718 NHLNTV-HTPDNHPSTVHIPDKQLSPVHTQDNQSSPVHTPDNQPSTVHTPDNQPS 771


>SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)
          Length = 261

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 60  HVVDHNPDYNPGQVHVVDNSGVPS 131
           +V+D NP ++P ++H+ D  GVPS
Sbjct: 183 NVLDLNPSFHPAEIHLRD-IGVPS 205


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 276  YDYPLARGGKYMSHTD 323
            Y+ PL RGGK++ H+D
Sbjct: 2258 YEEPLVRGGKHLMHSD 2273


>SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)
          Length = 141

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 369 FPNFNLVMHLYSYFLFCFCSN*QSSNKIFF 458
           F NF +V   Y+   FCFC +  S N +++
Sbjct: 51  FRNFKIVYRRYAGLYFCFCVD-VSDNNLYY 79


>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 171 PFFSHPSNGPSGNYEPISTGPAFVDFYHPNYPPERYDYP 287
           P+ S P   P+  Y P S GP     YH   PP   D+P
Sbjct: 111 PYRSGPYQ-PNPGYSPFS-GPLMHPSYHMPQPPSFQDHP 147


>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
          Length = 399

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 342 PSFKIANQYETYTSHHG-REGSRIA 271
           P+F++ + +  YTSHH     SR+A
Sbjct: 203 PTFRVTSHFSRYTSHHALHHTSRVA 227


>SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)
          Length = 454

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 30  VLAMAVVNRVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVLANP 167
           ++ + VV    ++  N   + G +HV+D    PS GN    +  NP
Sbjct: 89  LVLVKVVQGAKIIQANQGASNGIIHVIDRVIFPSSGNLMSYLNENP 134


>SB_30246| Best HMM Match : IspA (HMM E-Value=0.39)
          Length = 1502

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 87  NPGQVHVVDNSGVPS--DGNSDHVVLANPDPFFSHPSNGPSGNYEPISTGPAFVDFYHPN 260
           N G   VV    +PS  +GN  ++    P     H +NG SG   P++      +FY+  
Sbjct: 57  NEGPRPVVSKKILPSFYEGNPKYLNTGYPKCVHFHNTNGTSGYQTPLN------NFYNTG 110

Query: 261 YP 266
           YP
Sbjct: 111 YP 112


>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
          Length = 820

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 162 NPDPFFSHPSNGPSGNYEPISTGPAFVDFYHPNYPPERYDYP 287
           NP P + + S  P   Y P     A   +YH   P  RY YP
Sbjct: 412 NPQPRY-YLSGNPQSRYYPSWKSTAQPRYYHSGNPQSRY-YP 451


>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 39  MAVVNRVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVLANPDPFFSHP-SNGPSGNYE 215
           +A+ N   ++ HNP YN     +     +PS+   +  + +  DP   HP S  P+    
Sbjct: 525 LAIENSDTIIGHNPQYNMFLCAI--EITIPSERYQEPTIPSTHDP--KHPRSQAPT---I 577

Query: 216 PISTGPAFVDFYHPNYPPERYDY 284
           P +  P    +  P+ P   Y Y
Sbjct: 578 PSTHDPKHPRYQAPSIPSTHYLY 600


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,488,741
Number of Sequences: 59808
Number of extensions: 325286
Number of successful extensions: 989
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)