SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B16
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    29   1.3  
At1g77500.1 68414.m09025 expressed protein contains Pfam domains...    28   3.0  
At3g12420.1 68416.m01547 hypothetical protein                          28   4.0  
At2g33520.1 68415.m04109 expressed protein                             28   4.0  
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta...    28   4.0  
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta...    28   4.0  
At1g74790.1 68414.m08665 expressed protein contains similarity t...    28   4.0  
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica...    27   5.3  
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica...    27   5.3  
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa...    27   5.3  
At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identica...    27   7.0  
At4g28690.1 68417.m04099 expressed protein                             27   9.3  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    27   9.3  
At3g26400.1 68416.m03292 eukaryotic translation initiation facto...    27   9.3  
At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) fa...    27   9.3  
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    27   9.3  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 153 VLANPDPFFSHPSNGPSGNYEPISTGPAFVDFYHPNYPPERYDYPLARGG 302
           ++A P P+   P+ GP     P+S+ PA       N+P   Y  P   GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294


>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 879

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +3

Query: 63  VVDHNPDYNPGQVHVVDNSGVPSD-GNSDHVVLANPDPFFSHPSNGPSGNYEPISTGPAF 239
           V++     +   +H+   S   S+ G+ DH+ + +         + PSG Y P +  P  
Sbjct: 102 VIEEEDTDDDSHLHLSSGSESESEVGSKDHIQITSTPEQERSTESFPSG-YHPTNYAP-- 158

Query: 240 VDFYHPNYPP-ERYDYP 287
              Y P YPP   + YP
Sbjct: 159 -PVYPPGYPPGYPFSYP 174


>At3g12420.1 68416.m01547 hypothetical protein
          Length = 308

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
 Frame = +3

Query: 159 ANPDPFFSHPSNGPSGNYEPISTGPAFVDFYHP------NYPPERYDYPLARGGKYMSH 317
           ANP P   +  + P  +Y+P      +   +HP      N PP RYD       +Y  H
Sbjct: 73  ANPPPDRYYSDHHPPRSYDPNPPPNRYYSDHHPPRSYDRNPPPNRYDANDLPPNRYYDH 131


>At2g33520.1 68415.m04109 expressed protein 
          Length = 97

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +3

Query: 180 SHPSNGPSGNYEPISTGPAFVDFYHPNYPPERYDYPLARGGKYMSH 317
           S+ S GPS  Y+PI   P       P YPP R  Y    GG    H
Sbjct: 10  SYQSPGPSPLYQPIIEAPP------PPYPPTRTRYQDYYGGYGQPH 49


>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 147 HVVLANPDPFFSHPSNGPSGN-YEPISTGPAFVDFYHPNYPPERYDYPLARGGKY 308
           H   ++  P  + PSNG   + Y+ +S  P    ++  +YP + + Y  +  G Y
Sbjct: 224 HAPPSHAPPSHAPPSNGYGAHGYDAMSRMPTNSTYFLGHYPGQGHGYDYSTNGSY 278


>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 147 HVVLANPDPFFSHPSNGPSGN-YEPISTGPAFVDFYHPNYPPERYDYPLARGGKY 308
           H   ++  P  + PSNG   + Y+ +S  P    ++  +YP + + Y  +  G Y
Sbjct: 224 HAPPSHAPPSHAPPSNGYGAHGYDAMSRMPTNSTYFLGHYPGQGHGYDYSTNGSY 278


>At1g74790.1 68414.m08665 expressed protein contains similarity to
           hedgehog-interacting protein GI:4868122 from [Mus
           musculus]
          Length = 695

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
 Frame = +3

Query: 123 VPSDGNSDHVVLANPDPFFSHPSNGPSGNYEPISTGPAF--VDFYHPNYPPERYDYPLAR 296
           +   GN    V   PD F  HP + P GN    S  P F  + + H           +  
Sbjct: 485 ISKGGNYGWRVYEGPDLF--HPESSPGGNTSVKSLNPIFPVMGYNHSEVDSSGKSASITG 542

Query: 297 GGKYMSHTD 323
           G  Y S TD
Sbjct: 543 GYFYRSETD 551


>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1102

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 180 SHPSNGPSGNYEPISTGPAFVDFYHPNYPPERYDYP 287
           SH   GPS N  P+  GP     Y P+ P +   YP
Sbjct: 896 SHSFTGPSNNAYPVPPGPG---QYAPSGPSQLGQYP 928


>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1104

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 180 SHPSNGPSGNYEPISTGPAFVDFYHPNYPPERYDYP 287
           SH   GPS N  P+  GP     Y P+ P +   YP
Sbjct: 898 SHSFTGPSNNAYPVPPGPG---QYAPSGPSQLGQYP 930


>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
          Length = 531

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 105 VVDNSGVPSDGNSDHVVLANPDPFFSHP 188
           V++N  +P   N  HVVLA+P P   +P
Sbjct: 244 VLENCNLPY-ANHGHVVLADPSPILMYP 270


>At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identical
           to ARF6 [Arabidopsis thaliana] GI:4102600 (Science 276
           (5320), 1865-1868 (1997))
          Length = 933

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 222 STGPAFVDFYHPNYPPERYDYPLARGGKYMSHT 320
           +T   F  FY+P   P  +  PLA+  K + HT
Sbjct: 258 ATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHT 290


>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = +3

Query: 66  VDHNPDYNPGQVHVVDN--SGVPSDGNSDHVVLANPDPFFSHPSNG---PSGNYEPISTG 230
           V  NP   P  +  + N  SG  +   S  VV +NP      PSNG   P  + + IS G
Sbjct: 235 VQQNPGSQPHAMQSLPNHKSGSNNGNPSPQVVPSNPYVLTRRPSNGVYPPENSVQNISQG 294


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 186 PSNGPSGNYEPISTGPAFVDFYHP-NYPPERYDYP 287
           PS+ PS ++ P  TGP+   + HP ++ P   D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270


>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
           4B, putative/ eIF-4B, putative similar to eukaryotic
           initiation factor 4B [Arabidopsis thaliana] GI:6739518
          Length = 532

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -2

Query: 282 SRIARVDNWDDRNRRTPVQCLWVHNFR*DRLMDERRK---DPGSQEQRGHYCRPMVHHYC 112
           SR   VDNW    R+ PV+     +   D   +ERR+   +P   E  G    P+V    
Sbjct: 218 SRADDVDNWGAGKRQAPVRSSTFGSSFGDSGQEERRRLVLEPRKVESGGSETPPVVEKTS 277

Query: 111 PPREPG 94
            P   G
Sbjct: 278 KPNPFG 283


>At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger)
          family protein contains Pfam profile: PF00097 zinc
          finger, C3HC4 type (RING finger)
          Length = 325

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 12 VFIFFAVLAMAVVNRVHVVDHNP 80
          +++F  VLA+ + +  H ++HNP
Sbjct: 18 IYLFLIVLAIMISSFAHEIEHNP 40


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +3

Query: 117 SGVPSDGNSDHVVLANPDPFFSHPSNGPSGNYEPISTGPAFVDFYHP 257
           SG  SD     +       F  + ++G SG Y P   GP  V    P
Sbjct: 4   SGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFP 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,076,747
Number of Sequences: 28952
Number of extensions: 219275
Number of successful extensions: 694
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -