BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I09A02NGRL0002_B16 (499 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 29 1.3 At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 28 3.0 At3g12420.1 68416.m01547 hypothetical protein 28 4.0 At2g33520.1 68415.m04109 expressed protein 28 4.0 At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta... 28 4.0 At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta... 28 4.0 At1g74790.1 68414.m08665 expressed protein contains similarity t... 28 4.0 At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 27 5.3 At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 27 5.3 At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa... 27 5.3 At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identica... 27 7.0 At4g28690.1 68417.m04099 expressed protein 27 9.3 At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 27 9.3 At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 27 9.3 At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) fa... 27 9.3 At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 27 9.3 >At3g44340.1 68416.m04764 sec23/sec24 transport family protein contains Pfam domains PF04811: Sec23/Sec24 trunk domain, PF04815: Sec23/Sec24 helical domain and PF04810: Sec23/Sec24 zinc finger Length = 1096 Score = 29.5 bits (63), Expect = 1.3 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +3 Query: 153 VLANPDPFFSHPSNGPSGNYEPISTGPAFVDFYHPNYPPERYDYPLARGG 302 ++A P P+ P+ GP P+S+ PA N+P Y P GG Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294 >At1g77500.1 68414.m09025 expressed protein contains Pfam domains, PF04782: Protein of unknown function (DUF632) and PF04783: Protein of unknown function (DUF630) Length = 879 Score = 28.3 bits (60), Expect = 3.0 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = +3 Query: 63 VVDHNPDYNPGQVHVVDNSGVPSD-GNSDHVVLANPDPFFSHPSNGPSGNYEPISTGPAF 239 V++ + +H+ S S+ G+ DH+ + + + PSG Y P + P Sbjct: 102 VIEEEDTDDDSHLHLSSGSESESEVGSKDHIQITSTPEQERSTESFPSG-YHPTNYAP-- 158 Query: 240 VDFYHPNYPP-ERYDYP 287 Y P YPP + YP Sbjct: 159 -PVYPPGYPPGYPFSYP 174 >At3g12420.1 68416.m01547 hypothetical protein Length = 308 Score = 27.9 bits (59), Expect = 4.0 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Frame = +3 Query: 159 ANPDPFFSHPSNGPSGNYEPISTGPAFVDFYHP------NYPPERYDYPLARGGKYMSH 317 ANP P + + P +Y+P + +HP N PP RYD +Y H Sbjct: 73 ANPPPDRYYSDHHPPRSYDPNPPPNRYYSDHHPPRSYDRNPPPNRYDANDLPPNRYYDH 131 >At2g33520.1 68415.m04109 expressed protein Length = 97 Score = 27.9 bits (59), Expect = 4.0 Identities = 18/46 (39%), Positives = 20/46 (43%) Frame = +3 Query: 180 SHPSNGPSGNYEPISTGPAFVDFYHPNYPPERYDYPLARGGKYMSH 317 S+ S GPS Y+PI P P YPP R Y GG H Sbjct: 10 SYQSPGPSPLYQPIIEAPP------PPYPPTRTRYQDYYGGYGQPH 49 >At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-containing protein contains Pfam profile PF00226 DnaJ domain Length = 706 Score = 27.9 bits (59), Expect = 4.0 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +3 Query: 147 HVVLANPDPFFSHPSNGPSGN-YEPISTGPAFVDFYHPNYPPERYDYPLARGGKY 308 H ++ P + PSNG + Y+ +S P ++ +YP + + Y + G Y Sbjct: 224 HAPPSHAPPSHAPPSNGYGAHGYDAMSRMPTNSTYFLGHYPGQGHGYDYSTNGSY 278 >At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-containing protein contains Pfam profile PF00226 DnaJ domain Length = 706 Score = 27.9 bits (59), Expect = 4.0 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +3 Query: 147 HVVLANPDPFFSHPSNGPSGN-YEPISTGPAFVDFYHPNYPPERYDYPLARGGKY 308 H ++ P + PSNG + Y+ +S P ++ +YP + + Y + G Y Sbjct: 224 HAPPSHAPPSHAPPSNGYGAHGYDAMSRMPTNSTYFLGHYPGQGHGYDYSTNGSY 278 >At1g74790.1 68414.m08665 expressed protein contains similarity to hedgehog-interacting protein GI:4868122 from [Mus musculus] Length = 695 Score = 27.9 bits (59), Expect = 4.0 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Frame = +3 Query: 123 VPSDGNSDHVVLANPDPFFSHPSNGPSGNYEPISTGPAF--VDFYHPNYPPERYDYPLAR 296 + GN V PD F HP + P GN S P F + + H + Sbjct: 485 ISKGGNYGWRVYEGPDLF--HPESSPGGNTSVKSLNPIFPVMGYNHSEVDSSGKSASITG 542 Query: 297 GGKYMSHTD 323 G Y S TD Sbjct: 543 GYFYRSETD 551 >At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical protein contains similarity to ec31p [Oryza sativa] gi|13928450|dbj|BAB47154; contains Pfam profile PF00400: WD domain, G-beta repeat Length = 1102 Score = 27.5 bits (58), Expect = 5.3 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +3 Query: 180 SHPSNGPSGNYEPISTGPAFVDFYHPNYPPERYDYP 287 SH GPS N P+ GP Y P+ P + YP Sbjct: 896 SHSFTGPSNNAYPVPPGPG---QYAPSGPSQLGQYP 928 >At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical protein contains similarity to ec31p [Oryza sativa] gi|13928450|dbj|BAB47154; contains Pfam profile PF00400: WD domain, G-beta repeat Length = 1104 Score = 27.5 bits (58), Expect = 5.3 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +3 Query: 180 SHPSNGPSGNYEPISTGPAFVDFYHPNYPPERYDYP 287 SH GPS N P+ GP Y P+ P + YP Sbjct: 898 SHSFTGPSNNAYPVPPGPG---QYAPSGPSQLGQYP 930 >At1g58440.1 68414.m06648 squalene monooxygenase, putative / squalene epoxidase, putative similar to SP|O65404 (SE 1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021 Length = 531 Score = 27.5 bits (58), Expect = 5.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +3 Query: 105 VVDNSGVPSDGNSDHVVLANPDPFFSHP 188 V++N +P N HVVLA+P P +P Sbjct: 244 VLENCNLPY-ANHGHVVLADPSPILMYP 270 >At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identical to ARF6 [Arabidopsis thaliana] GI:4102600 (Science 276 (5320), 1865-1868 (1997)) Length = 933 Score = 27.1 bits (57), Expect = 7.0 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +3 Query: 222 STGPAFVDFYHPNYPPERYDYPLARGGKYMSHT 320 +T F FY+P P + PLA+ K + HT Sbjct: 258 ATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHT 290 >At4g28690.1 68417.m04099 expressed protein Length = 448 Score = 26.6 bits (56), Expect = 9.3 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Frame = +3 Query: 66 VDHNPDYNPGQVHVVDN--SGVPSDGNSDHVVLANPDPFFSHPSNG---PSGNYEPISTG 230 V NP P + + N SG + S VV +NP PSNG P + + IS G Sbjct: 235 VQQNPGSQPHAMQSLPNHKSGSNNGNPSPQVVPSNPYVLTRRPSNGVYPPENSVQNISQG 294 >At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family protein Length = 421 Score = 26.6 bits (56), Expect = 9.3 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +3 Query: 186 PSNGPSGNYEPISTGPAFVDFYHP-NYPPERYDYP 287 PS+ PS ++ P TGP+ + HP ++ P D P Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270 >At3g26400.1 68416.m03292 eukaryotic translation initiation factor 4B, putative/ eIF-4B, putative similar to eukaryotic initiation factor 4B [Arabidopsis thaliana] GI:6739518 Length = 532 Score = 26.6 bits (56), Expect = 9.3 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Frame = -2 Query: 282 SRIARVDNWDDRNRRTPVQCLWVHNFR*DRLMDERRK---DPGSQEQRGHYCRPMVHHYC 112 SR VDNW R+ PV+ + D +ERR+ +P E G P+V Sbjct: 218 SRADDVDNWGAGKRQAPVRSSTFGSSFGDSGQEERRRLVLEPRKVESGGSETPPVVEKTS 277 Query: 111 PPREPG 94 P G Sbjct: 278 KPNPFG 283 >At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 325 Score = 26.6 bits (56), Expect = 9.3 Identities = 8/23 (34%), Positives = 16/23 (69%) Frame = +3 Query: 12 VFIFFAVLAMAVVNRVHVVDHNP 80 +++F VLA+ + + H ++HNP Sbjct: 18 IYLFLIVLAIMISSFAHEIEHNP 40 >At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA helicase SDE3 [Arabidopsis thaliana] GI:13811296 Length = 1002 Score = 26.6 bits (56), Expect = 9.3 Identities = 14/47 (29%), Positives = 18/47 (38%) Frame = +3 Query: 117 SGVPSDGNSDHVVLANPDPFFSHPSNGPSGNYEPISTGPAFVDFYHP 257 SG SD + F + ++G SG Y P GP V P Sbjct: 4 SGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFP 50 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,076,747 Number of Sequences: 28952 Number of extensions: 219275 Number of successful extensions: 694 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 678 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 692 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 878448512 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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