Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B15
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    25   6.7  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +3

Query: 312 TIYAAPAAVSHQSLVDXXXXXXXXXXXXXXXXXXXXXLAHSAFKIAEHGHLLKKRSLAAY 491
           T+ + P  + H+++VD                     +   A  +AEH  L KK++    
Sbjct: 404 TLASIPDELYHETVVDMPTKQVSNKERLEILREQEELIEEEAEHVAEHPDLAKKQTEENK 463

Query: 492 AIAPAAVSEQS 524
           A +  AVS +S
Sbjct: 464 ATSKPAVSAKS 474


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 165 GRPLDTADVINARAVHL-QAKALELDASHVHAVVAPVTYSVAAPISYSAPTIY 320
           GR LD+  ++    + L QA+   L      A  + + YS+AA I+ SA T+Y
Sbjct: 166 GRDLDSNFLLGIYNLFLGQAQECVLGHMSFSASDSNMNYSLAAKIASSAATLY 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,829
Number of Sequences: 5004
Number of extensions: 39358
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)