Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B15
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450...    29   2.3  
11_02_0106 - 8358372-8360120                                           29   4.0  
04_04_1535 + 34205426-34205593,34205697-34206869                       27   9.2  

>06_03_0849 -
           25344261-25344416,25344652-25344808,25344917-25345056,
           25345160-25345295,25345392-25345663,25345809-25346068,
           25346716-25347035,25347287-25347352,25347439-25347510,
           25347609-25347680,25347776-25347858,25348068-25348139,
           25348389-25348485,25348918-25349050,25349158-25349236
          Length = 704

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 75  VFIALTAVACGSLVPLAQPLHNSAVVLDIHGRPLDTADVINARAVHLQAKALELDASHVH 254
           + I   A ACG L  L   LHN     D  G   ++ DV +  AV++   +      H  
Sbjct: 285 IVIGSMAAACGVLFALVLCLHNVRKSKD--GGISESKDVASTFAVNIDRASNREIWDHTQ 342

Query: 255 AVVAPVTYSVAAPISYSAP-TIYAAPAAVSHQSLV 356
              APV+ SV  P+    P  +Y+  +++S +  V
Sbjct: 343 Q-DAPVSSSVLPPMGKMTPERVYSTNSSMSKKMKV 376


>11_02_0106 - 8358372-8360120
          Length = 582

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +3

Query: 66  TLVVFIALTAVACGSLVPLAQPLHNSAVVLDIHGRPLDTADVINARA 206
           T ++F A +A A  SL  L  P+H  AVVL I   P     +I A A
Sbjct: 23  TRLLFAAASASAAASLRALL-PIHARAVVLGISANPAFATSLITAVA 68


>04_04_1535 + 34205426-34205593,34205697-34206869
          Length = 446

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 195 NARAVHLQAKALELDASHVHAVVAPVTYSVAAPISYSAPT 314
           NAR + L A AL L A H+H VV   +++  A +S +AP+
Sbjct: 8   NARLLAL-ALALLLAALHLHGVVCDPSHTHFAMVSRNAPS 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,136,663
Number of Sequences: 37544
Number of extensions: 281742
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)