Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B15
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)                29   3.1  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  

>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 240 ASHVHAVVAPVTYSVAAPISYSAPTIYAAPAAVSHQS 350
           A+   A VAP+  +V AP    APT  A P   + Q+
Sbjct: 625 ATEPQATVAPLAQTVTAPAQTEAPTHTAGPPQTTEQA 661


>SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)
          Length = 510

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 236 KFQSFSLKVHSASIDHISRIQRSAVNVQNYC-GVMKWL 126
           +F  +S+  H A   H +++Q S  + Q+ C G+M WL
Sbjct: 257 RFNQWSVNSHEARPGHHTQVQGSVEHFQDQCGGLMGWL 294


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 254 MNVRSVKFQSFSLKVHSASIDHISRIQRSAVNVQNYC 144
           MN   +K  S  LKV +A    I+ +  +++N++NYC
Sbjct: 740 MNRHQLKKTSSKLKVDAAISPGITMLNWNSLNIENYC 776


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,409,802
Number of Sequences: 59808
Number of extensions: 323762
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)