Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B15
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39130.1 68417.m05540 dehydrin family protein contains Pfam d...    31   0.62 
At1g18290.1 68414.m02284 hypothetical protein                          28   5.8  
At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein ...    27   7.7  

>At4g39130.1 68417.m05540 dehydrin family protein contains Pfam
           domain, PF00257: Dehydrin
          Length = 151

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +3

Query: 138 NSAVVLDIHGRPLDTADVINARAVHLQAKALELDASHVHAVVAPVTYSVAAPISYSAPTI 317
           N   + D HG P    D     A+HL   A  +      +   P  + + AP++ +    
Sbjct: 10  NPIYLTDAHGEPAQLMDEFG-NAMHLTGVATTVPHLKESSYTGP--HPITAPVTTTNTPH 66

Query: 318 YAAPAAVSHQSLVD 359
           +A P +VSH  L D
Sbjct: 67  HAQPISVSHDPLQD 80


>At1g18290.1 68414.m02284 hypothetical protein
          Length = 176

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 153 LDIHGRPLDTADVINARAVHLQAKALELDASHVHAVVAPVTY 278
           L++  +P+ T+D+++  + H    +  L  SH    V+P  Y
Sbjct: 31  LEVFSKPIKTSDIVSRHSGHFITDSTLLQISHRVTAVSPDEY 72


>At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 304

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 168 CRECPKLLRSYEVVGLTAPGSHKPQRLK 85
           C  C K+LRSY+ +G     SHK +RLK
Sbjct: 230 CDTCGKVLRSYQALG-GHRTSHKYKRLK 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,925,285
Number of Sequences: 28952
Number of extensions: 216733
Number of successful extensions: 531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)