Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B14
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    28   0.87 
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   6.2  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    25   6.2  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   8.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   8.1  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 258  DYITT**IHINKVKENK*NEILDYNKRY*TVFFFLEYHLYVYLQQENKVQSILNE 94
            +YIT    H  + +E K  EI  Y   +  V F LE H  +Y+  +  V++ L E
Sbjct: 1216 EYITYNWPHWLRKQEEKQREIWGYKILFLDVLFPLELHKVIYVDADQIVRADLQE 1270


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 30  NLLERF*MIDLSSSFNHSTIETHSIYSVLYFLVEDIRIDGIQEKKKLFNI 179
           N+LE+  ++   SS+ H      SIY +L+F + +     ++  + L NI
Sbjct: 118 NVLEKLLLLQDYSSWTHGNSCKTSIYILLFFALSNTEKTRVRSLQILANI 167


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 143 RWYSRKKKTV*YLLL*SNISFYLFSFTLF 229
           RWY+R++K++       N+S  L++F LF
Sbjct: 113 RWYTRRRKSI------PNLSIKLYAFQLF 135


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 393 DNIYEYIDIILQK 355
           DN YEY+D+ L+K
Sbjct: 31  DNTYEYVDVFLEK 43


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 60  LSSSFNHSTIETH--SIYSVLYFLVEDIRIDGIQEKKK 167
           LSS  ++ST + +   +   L+F+ E++R+D + + +K
Sbjct: 451 LSSHLDYSTFKNYLMPLAITLHFISEELRLDSVVKPRK 488


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 161 FFLNTIYTYIFNKKIKYRVY*MSFNST 81
           + L   YTY+FN K+ Y+    ++ +T
Sbjct: 8   YLLRIRYTYVFNLKVSYQSERRTYGAT 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,157
Number of Sequences: 5004
Number of extensions: 41497
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)