Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B14
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0660 - 19768165-19769394,19770500-19770752,19771307-197713...    30   1.2  
05_04_0270 - 19598062-19598694,19598797-19599154,19599247-195994...    30   1.2  
08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099     29   3.6  
04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939...    29   3.6  
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547...    28   4.8  
01_01_0934 + 7374381-7374652,7375339-7375864                           27   8.3  

>08_02_0660 -
           19768165-19769394,19770500-19770752,19771307-19771372,
           19771524-19771588,19773265-19773343,19773920-19774293
          Length = 688

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 414 PPSPFHHDNIYEYIDII 364
           PP PFHH +IY+ ++++
Sbjct: 409 PPRPFHHGDIYQQVEVV 425


>05_04_0270 -
           19598062-19598694,19598797-19599154,19599247-19599491,
           19599869-19599877,19599909-19599977,19600043-19600552
          Length = 607

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +3

Query: 15  KTSLSNLLERF*MIDLSSSFNHSTIETHSIYS-VLYFLVEDIRIDGIQEKKKLFNIFCYN 191
           K +L+ +L+RF ++     F    +E+HS  S VL FL   IR +   +    F +F  N
Sbjct: 494 KVALAMILQRFALVVSRPMFMRQCMESHSNPSTVLKFL--PIRFETSMDLCVDFWVFAVN 551

Query: 192 LISHSICFLLLYLYV 236
           +++ +    +LY++V
Sbjct: 552 MVNAADVHRVLYIFV 566


>08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099
          Length = 453

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 414 PPSPFHHDNIYEYIDI 367
           PP PFHH ++Y+ +++
Sbjct: 190 PPRPFHHGDVYQQVEV 205


>04_04_1427 +
           33491847-33491888,33493504-33493623,33493740-33493976,
           33494754-33495638,33495733-33495837,33495920-33496064,
           33496146-33496310,33496391-33496629,33496724-33496756,
           33496840-33496921,33497017-33497177,33497282-33497455,
           33497549-33497731,33497832-33498019,33498155-33498251
          Length = 951

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 213 FLLLYLYVFTMSLY-NLVTIFIKGAG*IWSFKFWDHEYVDNFLLITFKFFVK 365
           F+L  L    +++Y N     IKG G  W+   W +  V  F L  FKFF++
Sbjct: 791 FMLAQLVATFLAVYANWGFARIKGIGWGWAGVIWLYSIVFYFPLDIFKFFIR 842


>04_04_0822 +
           28352941-28353825,28353863-28354016,28354714-28354754,
           28355060-28355310,28355411-28355591,28356138-28356323,
           28356396-28356569,28356992-28357150,28357424-28357501,
           28357612-28357748,28357980-28358044,28358115-28358148,
           28358216-28358372,28359135-28359196,28360041-28360118,
           28360940-28361042
          Length = 914

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 90  ETHSIYSVLYFLVEDIRIDGIQEKKKLFNIFCYNLIS 200
           + H ++S+L F++ DI   G  + KKL N   + LIS
Sbjct: 502 DLHELWSLLEFMMPDIFATGDIDLKKLLNAEDHELIS 538


>01_01_0934 + 7374381-7374652,7375339-7375864
          Length = 265

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
 Frame = -1

Query: 364 FTKNLK-VISKKLSTYS-WSQNLKDHIHPAPL---INIVTRLYNDI 242
           FT + K V+ + +ST S + +N  +H+HPA L   +++ T+++ DI
Sbjct: 140 FTPHAKQVVQEFMSTCSTYQRNKTEHLHPAGLLQSLSVPTQVWEDI 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,279,059
Number of Sequences: 37544
Number of extensions: 212003
Number of successful extensions: 434
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)