Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B14
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein...    28   4.2  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    27   7.4  
Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine rec...    27   9.8  

>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 171 FNIFCYNLISHSI-CFLLLYLYVFTMSLYNLVTIFI 275
           F + CY++   S+ CF+L + Y+F + L +  TIF+
Sbjct: 90  FGVDCYDMQPSSLRCFILRFPYMFGLILSSTTTIFL 125


>Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical
           protein F13G3.3 protein.
          Length = 501

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 358 KNLKVISKKLSTYSWSQNLKDHIHPAPLINIVTRLYND 245
           KN+K+I K  +  SW  +++ H+   P+    ++L +D
Sbjct: 395 KNIKMIEKDFNRMSWKSSVRRHLRNLPINMTYSKLISD 432


>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical
           protein T02D1.3 protein.
          Length = 322

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
 Frame = +3

Query: 183 CYNLISHSICFLLLYLYVFTMSL---------YNLVTIFIKGAG*IWSFKFWDHEYVDNF 335
           C  ++  SI F+ LY  +FT +L         YN++  F  G   ++    W +  +DNF
Sbjct: 149 CSKVVEFSIPFIFLYPCIFTFTLNPALGLCRQYNVLYQF--GHIYVFFINNWFNVKLDNF 206

Query: 336 LLITFKFFVKLCQCTRI 386
           L+    F++ LC  T +
Sbjct: 207 LVPNAIFWLFLCTITNV 223


>U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein 7
           protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +3

Query: 189 NLISHSI-CFLLLYLY-----VFTMSLYNLVTIFIKGAG*IWSFKFWDHEYVDNFLL 341
           N+  H++ C LLL L+     VF  + Y L+T F  G    W F  ++  Y ++F+L
Sbjct: 291 NVQMHTVQCVLLLNLFTEKIFVFLWAWYILLTAFTVGNLFSWLFAVFNETYNEHFIL 347


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 491 QVLQKQNFRYFWHHQFVSNSLSKTLCPPPLSTMIIYTSTL 372
           Q + +    + WH+ F+   L+ TL PP    + +Y  TL
Sbjct: 124 QEIGRNTLIFSWHYLFIIAYLTSTLIPPS-DHLAVYNETL 162


>Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical
           protein R09H10.4 protein.
          Length = 877

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 195 ISHSICFLLLYLYVFTMSLYNLVTIFI 275
           IS S+C L+  + V  + +YN+ T+F+
Sbjct: 683 ISTSVCTLICMMIVCFLFMYNVFTVFV 709


>U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine
           receptor, class sx protein24 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 189 NLISHSICFLLLYLYVFTMSLYNLVTIFI 275
           +++S S CFL+    +F M++ +L+ +FI
Sbjct: 72  SVMSSSTCFLISIYGIFAMNMQSLLALFI 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,681,049
Number of Sequences: 27780
Number of extensions: 223279
Number of successful extensions: 685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)