Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B14
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15540.1 68414.m01869 oxidoreductase, 2OG-Fe(II) oxygenase fa...    30   1.3  
At4g30190.1 68417.m04292 ATPase 2, plasma membrane-type, putativ...    27   7.0  
At2g33570.1 68415.m04114 expressed protein                             27   7.0  

>At1g15540.1 68414.m01869 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to GS-AOP loci [GI:16118889,
           GI:16118887, GI:16118891, GI:16118893]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 320

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 429 KQNPLPPSPFHHDNIYEYIDII 364
           K +PL  +PFHHD + EY + +
Sbjct: 281 KDHPLAYNPFHHDGLLEYYETL 302


>At4g30190.1 68417.m04292 ATPase 2, plasma membrane-type, putative /
           proton pump 2, putative / proton-exporting ATPase,
           putative strong similarity to SP|P19456 ATPase 2, plasma
           membrane-type (EC 3.6.3.6) (Proton pump 2) {Arabidopsis
           thaliana}; contains InterPro accession IPR001757:
           ATPase, E1-E2 type; contains Pfam profile PF00690:
           Cation transporter/ATPase, N-terminus
          Length = 948

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 207 ICFLLLYLYVFTMSLY-NLVTIFIKGAG*IWSFKFWDHEYVDNFLLITFKFFVK 365
           I FL+  L    +++Y N     I+G G  W+   W +  V  F L  FKF ++
Sbjct: 789 IAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIR 842


>At2g33570.1 68415.m04114 expressed protein
          Length = 496

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 162 FFLEYHLYVYLQQENKVQSILNEF 91
           FF +   Y+YL   N ++S+L+EF
Sbjct: 328 FFFDVDEYIYLPHGNTLESVLDEF 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,643,315
Number of Sequences: 28952
Number of extensions: 192699
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)