Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B13
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 30 0.26
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 29 0.78
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 28 1.0
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 27 2.4
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 27 2.4
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 4.2
SPAC1782.03 |||microfibrillar-associated protein family protein|... 26 5.5
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 26 5.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.5
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 5.5
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 26 5.5
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 25 7.3
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 7.3
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 9.6
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 25 9.6
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 30.3 bits (65), Expect = 0.26
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 203 ASDAEMGDGDKNTAGNECASSVRSETSYATVTSEKDASPEKGDDWT 340
+SDA++ D D ++ E SSV +ET+ VT+++ + +WT
Sbjct: 284 SSDAKVEDQDNDSMLGENKSSVSTETALKPVTNKRIREGDGNYEWT 329
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 28.7 bits (61), Expect = 0.78
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Frame = +2
Query: 74 PFVPADLNVEAIQNLIAMYLGGNMNASQRGNSSNSAEG---GATPAASD--AEMGDGDKN 238
PF+ N + + + G+ N S +SS +EG G + A+D +E D D N
Sbjct: 306 PFLTTLANGHGVMDASGNHHSGSSNQSINADSSAGSEGVDEGTSTEANDESSEDDDEDNN 365
Query: 239 T--AGNECASSVRSETSYATVTSEKD 310
T A + S+V E+ +S D
Sbjct: 366 TDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 206 SDAEMGDGDKNTA--GNECASSVRSETSYATVTSEKDASPEKGDDWTVI 346
SD +GDG+K ++ +E A++ T A T+ +A E+G WT I
Sbjct: 336 SDIRLGDGEKKSSETDSEVAATKTPATEDAPATNAGEAEEEEG--WTKI 382
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = +2
Query: 272 SETSYATVTSEKDASPEKGDDWTVINNEKDLLDACMNPSSPKGQPAPIGFNLPEEFQERV 451
++ S T+ E A+P++ D++ + +L+AC +S + AP + EE ++ V
Sbjct: 221 ADISTETIILELTATPDRVDNFLSLLRPYGVLEACRTGTSAMTR-APHSNEVTEEAEDDV 279
Query: 452 RITE 463
+ E
Sbjct: 280 EVEE 283
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 396 KGNPLQSALICLKSFKSAFGSQRVRAFTHRSMRPLLC*ILKRRGRQYHSSHRQCSNQLHS 575
+GN + + C K F A+ + + TH + RP C I K+ + H R QLH+
Sbjct: 567 QGNYVCTFAGCNKRFTRAY-NLKSHMNTHTNYRPFQCSICKKSFARQHDKRRH--EQLHT 623
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 338 TVINNEKDLLDACMNPSSPKGQPAPIGFNLPEEFQE 445
TV+N+E++ MN SS G P +P + E
Sbjct: 305 TVLNHEREFSTINMNKSSSNGTPDRANSPIPSQLSE 340
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.2
Identities = 27/120 (22%), Positives = 53/120 (44%)
Frame = +2
Query: 29 ASQRADDASTSNSRCPFVPADLNVEAIQNLIAMYLGGNMNASQRGNSSNSAEGGATPAAS 208
AS + ASTS S +P+ + + + A + + ++S +SS ++ PA+S
Sbjct: 24 ASSSSAAASTSLSSSSVIPSSSS-SMLSSSSATAISSSSSSSPLSSSSFTS-----PASS 77
Query: 209 DAEMGDGDKNTAGNECASSVRSETSYATVTSEKDASPEKGDDWTVINNEKDLLDACMNPS 388
++ + +S+ + +S AT+TS ASP +++ L A + S
Sbjct: 78 SFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSS 137
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 240 PQGMNVHHQSVQRHPTLPLHLRKMPLP 320
PQ + Q +HP PL + +PLP
Sbjct: 747 PQAFQAYSQYPYQHPPFPLSEQMLPLP 773
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 146 NASQRGNSSNSAEGGATPAASDAEMGD 226
+AS+ ++SAEGG+ AAS +E D
Sbjct: 84 SASEYETDASSAEGGSNSAASSSEEED 110
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/68 (20%), Positives = 31/68 (45%)
Frame = +2
Query: 167 SSNSAEGGATPAASDAEMGDGDKNTAGNECASSVRSETSYATVTSEKDASPEKGDDWTVI 346
S+ A+ +T A D + + + N S + + + E+ SP GD++
Sbjct: 344 SAPRAQSASTETAQDLDFLTPPRLSVNNPFLSDLYPASEQGLSSCEEKDSPVDGDEFFNH 403
Query: 347 NNEKDLLD 370
NE+++++
Sbjct: 404 TNEEEIIE 411
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 122 AMYLGGNMNASQRGNSSNSAEG-GATPAASDAEMGDGDKNTAGN 250
A+ G N S RGN S A+G +T AS+ D + N
Sbjct: 1537 AISRAGRSNGSNRGNDSRDADGRRSTHYASNKRPRSSDSQSPSN 1580
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 14 GTHTGASQRADDASTSNSRCPF-VPADLNVEAIQNLIAMYLGGNMNASQR 160
G T D A+ S P VP +N+E + + YLG + SQR
Sbjct: 801 GKKTSPQSSEDAANKEASSVPLKVPDKVNIEIEEKDLTKYLGPPIYTSQR 850
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 239 TAGNECASSVRSETSYATVTSEKDASPEKGDDWTVINNEKDLL 367
T+ S + + + AT + ++S + D V+ N+KDLL
Sbjct: 782 TSNQNTTSEITTSETTATEKTPSNSSDTEDDVGDVVENDKDLL 824
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 371 ACMNPSSPKGQPAPIGFNLPEEFQERVR 454
A N S+ K + +GF PE+F E VR
Sbjct: 445 ALKNKSTLKHEFVTLGFGTPEQFDEWVR 472
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 152 SQRGNSSNSAEGGATPAASDAEMGDGDKNTAGNECASSVRSETSYATVTSEKDASPEKGD 331
S+ G +S++ + P+A +++ G NTAG+ S ++ S + + +KG
Sbjct: 632 SENGLASSTVASESKPSAPESKPSSGFGNTAGSSPFSFNLTKESKEVPPTNSFSFAKKGK 691
Query: 332 D 334
D
Sbjct: 692 D 692
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 207 VMRKWGMGIKTPQGMNVHHQSVQRHPTLPLHLRKMPLPRKEMT 335
++++ G+ TP+ + H + T PL R PRK +T
Sbjct: 217 ILKRISKGLGTPEQCMLLHNELIGPSTFPLPKRAKKPPRKRIT 259
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +2
Query: 98 VEAIQNLIAMYLGGNMNASQRGNSSNSAEGGATPAASDAEMGDGDKNTAGNECASSVRSE 277
+E I+ A G N S + + +E T S+ +GD+N G+E SS S
Sbjct: 645 IEGIKESFASTDTGLQNNSTATSENKRSESELT--MSNVLSNEGDRNEEGSEINSSQPST 702
Query: 278 TSYAT 292
++ T
Sbjct: 703 INHGT 707
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.0 bits (52), Expect = 9.6
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Frame = +2
Query: 50 ASTSNSRCPFVPADLNVEAIQNLIAMYLGGNMNASQRGNSSNSAEGGATPAASDAEMGDG 229
AS+ ++R PFVPA+ +L+ Y S+ A GA P S + +
Sbjct: 244 ASSGSTRYPFVPANTRASHSPSLLEPY--------AHSLPSSVAPVGAYPEKSSYLLSNS 295
Query: 230 DKNTAGNECASSVRSET-SYATVTSEKDASPEKGDDWTVIN 349
++A + R+ T + + EKG+ ++IN
Sbjct: 296 SNDSASRKEKPKARASTPPPLNFSRASEHRNEKGERISMIN 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,215
Number of Sequences: 5004
Number of extensions: 46393
Number of successful extensions: 173
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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