Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B13
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.16 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    27   0.21 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.5  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   7.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 53  STSNSRCPFVPADLNVEAIQNLIAMYLGGNMNASQRGNSSNSAEGGATPAASDAEMGDGD 232
           ST+ S C      L V   QN + +    N+N +    ++NS+   ++PA     +  G 
Sbjct: 513 STATSTC-----SLAVAKQQNQVPLTSSSNVNNNSGNGNTNSSARDSSPAIESISVDSGS 567

Query: 233 KNT 241
            NT
Sbjct: 568 INT 570


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 392 PKGQPAPIGFNLPEEFQERVRITEGQSLYPPLNAS 496
           P G P  +G+N+P E  E + I E   +YP  N S
Sbjct: 14  PAGPPRLLGWNVPAE--ELIHIPEHWLVYPEPNPS 46


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 11  GGTHTGASQRADDASTSNSRC 73
           G  H G++  +  +  SNSRC
Sbjct: 312 GSVHNGSNNGSPRSPESNSRC 332


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 454 DHRGSEPLPTAQCVHCCV 507
           +H GS+P    +C + CV
Sbjct: 10  NHFGSKPFKCEKCSYSCV 27


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 140 NMNASQRGNSSNSAEGGATPAAS 208
           NM+  ++ N  N   GG+T  AS
Sbjct: 6   NMDQEKKNNVENLKGGGSTTPAS 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,903
Number of Sequences: 438
Number of extensions: 3509
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)