Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B13
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64750.1 68418.m08142 AP2 domain-containing transcription fac... 31 0.51
At5g46500.1 68418.m05726 expressed protein 31 0.51
At4g17810.1 68417.m02657 zinc finger (C2H2 type) family protein ... 30 1.2
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 30 1.6
At2g41460.1 68415.m05122 apurinic endonuclease-redox protein / D... 29 2.7
At2g43970.2 68415.m05468 La domain-containing protein contains P... 29 3.6
At2g43970.1 68415.m05467 La domain-containing protein contains P... 29 3.6
At3g17420.1 68416.m02225 protein kinase family protein contains ... 28 6.3
At5g66990.1 68418.m08446 RWP-RK domain-containing protein contai... 27 8.3
At3g61570.1 68416.m06896 intracellular protein transport protein... 27 8.3
At3g44330.1 68416.m04763 expressed protein 27 8.3
At2g20230.1 68415.m02364 expressed protein 27 8.3
>At5g64750.1 68418.m08142 AP2 domain-containing transcription
factor, putative contains similarity to transcription
factor
Length = 391
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/87 (19%), Positives = 39/87 (44%)
Frame = +2
Query: 20 HTGASQRADDASTSNSRCPFVPADLNVEAIQNLIAMYLGGNMNASQRGNSSNSAEGGATP 199
H+ +Q+ +S+S+S ++ + AI + + + GN+ Q+G S EG +
Sbjct: 47 HSFPTQQPPPSSSSSSLISGFSREMEMSAIVSALTHVVAGNVPQHQQGGGEGSGEGTSNS 106
Query: 200 AASDAEMGDGDKNTAGNECASSVRSET 280
++S + + G + + + T
Sbjct: 107 SSSSGQKRRREVEEGGAKAVKAANTLT 133
>At5g46500.1 68418.m05726 expressed protein
Length = 417
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 275 ETSYATVTSEKDASPEKGD-DWTVINNEKDLLDACMN 382
E + +++E D S E+GD D INNE DL + C N
Sbjct: 379 ECEDSDISNESDQSEERGDSDDDGINNETDLFEECGN 415
>At4g17810.1 68417.m02657 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 180
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 122 AMYLGGNMNASQRGNSSNSAEGGATPAASDAEMGDGDKNTAGNECASSVRSET 280
A LGG+MN +R +S+ A G+T AA+ A G G N CA + + T
Sbjct: 52 AQALGGHMNVHRRDRASSRAHQGSTVAAA-ARSGHG--GMLLNSCAPPLPTTT 101
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +2
Query: 131 LGGNMNASQRGNSSNSAEGGATPAASDAEMGDGDKNTAGNECASSVRSETSYATVTSEKD 310
+GG A+ G S S+ GG+T A +E G TAG + T + S
Sbjct: 492 MGGGSAAA--GGVSESSSGGSTAAGGTSESASGGSATAGGASGGTYTDSTGGSPTGSPSA 549
Query: 311 ASP 319
P
Sbjct: 550 GGP 552
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/69 (28%), Positives = 26/69 (37%)
Frame = +2
Query: 134 GGNMNASQRGNSSNSAEGGATPAASDAEMGDGDKNTAGNECASSVRSETSYATVTSEKDA 313
GG + + SA GGAT S E G G T G + S A+ +
Sbjct: 333 GGESGSGGAASGGESASGGATSGGS-PETG-GSAETGGESASGGAASGGESASGGAASSG 390
Query: 314 SPEKGDDWT 340
S E G + T
Sbjct: 391 SVESGGEST 399
>At2g41460.1 68415.m05122 apurinic endonuclease-redox protein /
DNA-(apurinic or apyrimidinic site) lyase identical to
apurinic endonuclease-redox protein SP: P45951 from
[Arabidopsis thaliana]
Length = 536
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 251 ECASSVRSETSYATVTSEKDASPEKGDDWTVINNEKDLLD-ACMNPSSPKGQPAPIG 418
E +S++ SE T E +SP + + WTV+ ++K D NP + + P P G
Sbjct: 219 ETSSTISSEL---LKTEEIISSPSQSEPWTVLAHKKPQKDWKAYNPKTMRPPPLPEG 272
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 516 KRRGR-QYHSSHRQCSNQLHSRNHLHN 593
K RGR Q H + Q +N H++NH HN
Sbjct: 443 KGRGRGQPHQNQNQNNNHSHNQNHNHN 469
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 516 KRRGR-QYHSSHRQCSNQLHSRNHLHN 593
K RGR Q H + Q +N H++NH HN
Sbjct: 459 KGRGRGQPHQNQNQNNNHSHNQNHNHN 485
>At3g17420.1 68416.m02225 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 467
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 260 SSVRSETSYATVTSEKDASPEKGDDWTVINNEKDLLDACMNPSSPK-GQPAPIGFNLPE 433
SS + TSY T+ + E GD ++ +K L+ + + PS+P P+P+ LPE
Sbjct: 75 SSNNNGTSYQTLDEKFVEDIENGDKFSGSLEKKPLVGSHLPPSTPSTTAPSPL-LGLPE 132
>At5g66990.1 68418.m08446 RWP-RK domain-containing protein contains
Pfam profile: PF02042 RWP-RK domain
Length = 277
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/74 (20%), Positives = 33/74 (44%)
Frame = +2
Query: 86 ADLNVEAIQNLIAMYLGGNMNASQRGNSSNSAEGGATPAASDAEMGDGDKNTAGNECASS 265
A L++EAI + ++ + GN +N E + MGD + +E ++
Sbjct: 75 ASLDLEAISSTFSLDISSGWWNENNGNYNNQVEPNLDEISRTNTMGDPNMEQILHEDVNT 134
Query: 266 VRSETSYATVTSEK 307
++ +TS + ++
Sbjct: 135 MKEKTSQKRIIMKR 148
>At3g61570.1 68416.m06896 intracellular protein transport protein
USO1-related contains weak similarity to intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 712
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/75 (29%), Positives = 28/75 (37%)
Frame = +2
Query: 146 NASQRGNSSNSAEGGATPAASDAEMGDGDKNTAGNECASSVRSETSYATVTSEKDASPEK 325
N S + N + S A +D G + GN S R S + + S S K
Sbjct: 111 NGSLKQNLT-STSAALKEARTDISRGSNNYAIKGNNDQSPNRLHKSVSHLKSPNHMSNGK 169
Query: 326 GDDWTVINNEKDLLD 370
G D EKDL D
Sbjct: 170 GKDTDSFIKEKDLAD 184
>At3g44330.1 68416.m04763 expressed protein
Length = 565
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 478 VKALTLCDPNALLKLFRQIKADWSGLPFRGAR 383
V + LCD ++ ++R I+ D SG+PF G+R
Sbjct: 30 VACVELCDAATVVDVYRLIQYDISGVPF-GSR 60
>At2g20230.1 68415.m02364 expressed protein
Length = 270
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 392 PKGQPAPIGFNLPEEFQERVRITEGQSLYPPLN 490
P+G AP G + E + R+R G + PP+N
Sbjct: 235 PQGNQAPAGSSKIENWSSRIREKYGLNQSPPVN 267
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,700,021
Number of Sequences: 28952
Number of extensions: 269351
Number of successful extensions: 972
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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