Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B11
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 60 2e-09
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 60 2e-09
07_03_1000 - 23220878-23221821,23222164-23223001 54 8e-08
03_02_0187 - 6248226-6249226,6249296-6250148 48 5e-06
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 30 1.9
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 28 7.6
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Frame = +1
Query: 433 FGMDESYNLXXXXXXX-----XXXXXIWGVIRGLETWSQL--FYLTNDFRELRINSTDIY 591
FG+DESYNL ++G + LET+SQL F T+ EL+ I
Sbjct: 108 FGVDESYNLSVPATGSPIYAQIEAQTVFGALHALETFSQLCNFDFTSRLIELQSAPWSIT 167
Query: 592 DYPRYAHRGLLLDTSRHYLSV 654
D PR+ +RGLL+DTSRHYL V
Sbjct: 168 DMPRFPYRGLLIDTSRHYLPV 188
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 59.7 bits (138), Expect = 2e-09
Identities = 40/102 (39%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Frame = +1
Query: 382 VQELHVELTAPCEKLPYFGMDESYNLXXXXX---------XXXXXXXIWGVIRGLETWSQ 534
V +L V + + EKL G+DESY + I+G IRGLET+SQ
Sbjct: 101 VGKLTVVVASADEKLE-LGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRGLETFSQ 159
Query: 535 LFYLTNDFRELRINSTDIY--DYPRYAHRGLLLDTSRHYLSV 654
L D + + + Y D PR+A RGLLLDTSRH+L V
Sbjct: 160 LCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPV 201
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 54.4 bits (125), Expect = 8e-08
Identities = 53/195 (27%), Positives = 76/195 (38%), Gaps = 6/195 (3%)
Frame = +1
Query: 94 LNIVIPGPQYPPTKGEVWPKPQIQVKDDKYYTFD-PAVFTVKEPFQKCDFLTKALERYQF 270
L+ +P P VWPKP + + + F V P L+ A
Sbjct: 19 LSSPLPARCDAPLPVNVWPKPTSMSWAEPHMAVRVSSSFHVVAPSGNAHLLSAARRYAAL 78
Query: 271 LVRDLHR-ITRRFVKRSLGSQYRSLDDEAANDERFQGTVQELHVELTAPCEKLPYFGMDE 447
L+ + +R + V + G A V +LH AP + G+DE
Sbjct: 79 LLAERYRPLVTPAVNVTAGGAGAGAAGRGAELGYLTLAVSDLH----APLQH----GVDE 130
Query: 448 SYNLX---XXXXXXXXXXXIWGVIRGLETWSQLFYLTNDFRELRINS-TDIYDYPRYAHR 615
SY L WG +RGLET+SQL + R + + + + D P Y HR
Sbjct: 131 SYALEILPAGAAATVTAATAWGAMRGLETFSQLAWWCGRERAVLVAAGVRVEDRPLYPHR 190
Query: 616 GLLLDTSRHYLSVIE 660
GL+LDT R Y V +
Sbjct: 191 GLMLDTGRTYFPVAD 205
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Frame = +1
Query: 439 MDESYNLXX---XXXXXXXXXXIWGVIRGLETWSQLFYL----TNDFRELRINSTDIYDY 597
+DESY L WG IRGLET+SQL + + + + + +I D
Sbjct: 130 VDESYTLSVLPDSGSADISAATPWGAIRGLETFSQLAWAGGGAASGGQPIVPSGIEISDR 189
Query: 598 PRYAHRGLLLDTSRHYLSV 654
P + HRG+LLDT+R++ V
Sbjct: 190 PHFTHRGILLDTARNFYPV 208
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +1
Query: 148 PKPQIQVKDDKYYTFDPAVFTVKEPFQKCDFLTKALERYQFLVRDLHRITRR--FVKRSL 321
P+P +KY + P +F K+ + L E + + +DL I +R ++
Sbjct: 543 PEPNQDFWKEKYISSLPPLFAEKKKKNEQPDLISLFEDQKIMKQDLEEIRKRLYMLESKE 602
Query: 322 GSQYRSLDDEAANDERFQGTVQE 390
G D+ D+ GT+Q+
Sbjct: 603 GFHMEEKDEPIQEDDHVVGTIQK 625
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 27.9 bits (59), Expect = 7.6
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Frame = +1
Query: 349 EAANDERFQGTVQELHVELTAPCEKLPYFGMDESYNLXXXXX-----XXXXXXXIWGVIR 513
+ AN F + ++V + +P ++L FG+DESYNL ++G +
Sbjct: 84 DGANPSSF--VLTGVNVVVHSPEDELK-FGVDESYNLSVPTAGYPLRVQIEAQTVFGALH 140
Query: 514 GLETWSQLF--YLTN-DFRELRINSTDIYDYPRYAHRGLLLDTSRHYLSV 654
L+ S+L +LT+ DF + + D R L DTSRHYL V
Sbjct: 141 ALQNSSRLLGEFLTHQDF----LTEDFLLDQMR-----LHADTSRHYLPV 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,995,714
Number of Sequences: 37544
Number of extensions: 416687
Number of successful extensions: 1030
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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