Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B11
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical pr...    58   4e-09
AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidas...    58   4e-09
AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical ...    29   3.9  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    27   8.9  

>U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical
           protein T14F9.3 protein.
          Length = 555

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = +1

Query: 427 PYFGMDESYNLXXXXXXXXXXX-XIWGVIRGLETWSQLFYLTNDFRELRINSTDIYDYPR 603
           P  G  E Y L             +WG +R +E+ S L +  +  +E +I + +I+D PR
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169

Query: 604 YAHRGLLLDTSRHYLSV 654
           +  RG+++D+SRH+LSV
Sbjct: 170 FPVRGIMIDSSRHFLSV 186


>AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 555

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = +1

Query: 427 PYFGMDESYNLXXXXXXXXXXX-XIWGVIRGLETWSQLFYLTNDFRELRINSTDIYDYPR 603
           P  G  E Y L             +WG +R +E+ S L +  +  +E +I + +I+D PR
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169

Query: 604 YAHRGLLLDTSRHYLSV 654
           +  RG+++D+SRH+LSV
Sbjct: 170 FPVRGIMIDSSRHFLSV 186


>AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical
           protein C41D11.6 protein.
          Length = 852

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 139 PLLLADIVAQV*QCLNWRQKIRHTHQTIIDAVAYRN 32
           P+L  ++  +V Q +N R  +R TH  IIDA  + N
Sbjct: 718 PILWREVFTEVVQSVN-RPNVRGTHPAIIDAARHLN 752


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 26  YFISICYGIYYCLVCMAYFLP 88
           Y I I Y  YYCLV M +  P
Sbjct: 606 YIIFIAYLTYYCLVAMEFISP 626


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,118
Number of Sequences: 27780
Number of extensions: 365427
Number of successful extensions: 1003
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)