Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B10
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    29   0.66 
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    27   2.0  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   2.0  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    26   4.7  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   6.2  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   6.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.2  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   8.1  

>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = +1

Query: 31  TLTMKAITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLE 210
           T  M  + A+ A+ A      +   Q  +   N+E Q   S  ++L   + KN  +   E
Sbjct: 309 TAAMPEVRAL-ASHALTTLNKAAAAQAAKAANNSEKQALDSACKELREAVLKNTSVPH-E 366

Query: 211 VIQHVIDYICDLQSAL 258
           +   +IDY+CD  +AL
Sbjct: 367 LANSIIDYVCDALAAL 382


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 517 TFNINRNVFIIFHVKLNTMSACLVGFVSL-VSFGFYDPGSRVKSARW 380
           +F+++R   I+  +K+N + AC+  FV + ++ GF+ P     +  W
Sbjct: 786 SFDLSR--VIVKRIKMNLVWACIYNFVMIPIAMGFFLPWGIYLNPMW 830


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 470 KFDMKYDKDITVNIKSIPRNAGHTLGRRKKSSRSTQR 580
           KF+ +++++    I S PRN   +L RRK  SR   R
Sbjct: 341 KFNFRFEEEAGSQIVSHPRNVADSL-RRKDDSRKRAR 376


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 79  VPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKN 189
           + A  SG      DG NA  + Y++   +LV F+PKN
Sbjct: 77  IGATVSGWAPGPLDGSNAAWREYITLDVNLVYFVPKN 113


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 519 ILLILTVMSLSYFMSNLTRCRPVWLVLFLWCR-LVSMIL 406
           IL++LT   L Y  + LTR   V+    +W + LVS +L
Sbjct: 263 ILIVLTSQMLGYGFAGLTRRWIVYPAAMIWPQTLVSTVL 301


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 413 IETKRHQRNKTNQTGRHRVKFDMKYDKDITVNIKS 517
           +  K H  NK ++ G+ +++ +  +DK + ++ KS
Sbjct: 758 LSLKSHADNKIDERGKKKIRQENAFDKLLQISKKS 792


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 190  RKISKLEVIQHVIDYICDLQSALENHPAVGQFDAEGALAS 309
            +K +   VIQH+  Y+  + S+  +      F AEG +A+
Sbjct: 2018 QKTTACSVIQHIAAYVYAISSSTGSLYFAWNFGAEGGIAT 2057


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 175 FMPKNRKISKLEVIQHVIDYICDLQS 252
           ++P +RK++K  ++    +YI  LQS
Sbjct: 472 YVPLSRKLNKATILSKATEYIKSLQS 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,314
Number of Sequences: 5004
Number of extensions: 50132
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)