Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B10
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321... 30 1.6
01_05_0214 - 19362812-19363477 30 1.6
05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266 29 2.1
03_05_1000 - 29588532-29588768,29589461-29589782,29589875-29590233 29 2.1
01_06_1689 + 39204726-39205131,39208214-39208602,39208686-392088... 29 2.1
01_05_0296 + 20567259-20567386,20568895-20569123,20569205-205694... 29 2.1
01_05_0295 + 20537147-20537291,20539111-20539283,20539365-205395... 29 2.1
04_04_0328 + 24441747-24442073,24442205-24442327,24442947-244430... 29 2.7
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688... 28 4.8
04_03_0242 + 13253268-13253317,13254522-13254573,13254654-132547... 28 4.8
01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248 28 4.8
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 28 6.3
12_02_0971 + 24949137-24950534 27 8.3
>02_01_0444 +
3212646-3212686,3213093-3213225,3213467-3213570,
3214360-3214504,3214592-3214732,3214835-3216298
Length = 675
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 337 GVEVTRHKETMPRHPPRRTVQRQGDSPTL 251
GV ++E P+HPP RTV DS L
Sbjct: 605 GVGERSNREVAPQHPPERTVSLPSDSGNL 633
>01_05_0214 - 19362812-19363477
Length = 221
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 370 APNTILPTSPLNQDHRNQTT 429
A T+LPTSPL+ DH + TT
Sbjct: 51 ASPTLLPTSPLSDDHADHTT 70
>05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266
Length = 360
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 318 CRVTSTPPSKAAAGTSFCAKYHLADFTLEPGS 413
C S+ P+ AAAG A + D TL+PG+
Sbjct: 24 CAAASSAPAPAAAGHGVPAVFAFGDSTLDPGN 55
>03_05_1000 - 29588532-29588768,29589461-29589782,29589875-29590233
Length = 305
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 450 WLVLFLWCRLVSMILVQG*SRQDGIWRR 367
W++L W LVS++ G S+QD ++RR
Sbjct: 254 WVLLTGWRALVSLLFSTGQSQQDDVYRR 281
>01_06_1689 +
39204726-39205131,39208214-39208602,39208686-39208820,
39208936-39209001,39209150-39209218,39209402-39209455
Length = 372
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 136 IQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALE 261
I L KLQDLVP M K S +++ + YI +LQ +E
Sbjct: 316 ISKRLKKLQDLVPNMDKQTNTS--DMLDIAVTYIKELQGQVE 355
>01_05_0296 +
20567259-20567386,20568895-20569123,20569205-20569436,
20569583-20569701,20570321-20570377,20570455-20570639,
20571416-20571560,20571630-20571713,20571798-20571861,
20571889-20571932
Length = 428
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 364 EVPAAAFEGGVEVTRHKETMPRHPPRRTVQRQGDSPTLIEGRRCSLSHV 218
EV A F GGV + +HK+ + P V G L + SL +V
Sbjct: 133 EVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNV 181
>01_05_0295 +
20537147-20537291,20539111-20539283,20539365-20539596,
20539743-20539861,20540480-20540536,20540615-20540799,
20542252-20542396,20542463-20542546,20542634-20542697,
20542799-20542809
Length = 404
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 364 EVPAAAFEGGVEVTRHKETMPRHPPRRTVQRQGDSPTLIEGRRCSLSHV 218
EV A F GGV + +HK+ + P V G L + SL +V
Sbjct: 120 EVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNV 168
>04_04_0328 +
24441747-24442073,24442205-24442327,24442947-24443012,
24443155-24443223,24443263-24443307
Length = 209
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 148 LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALEN 264
L KLQ LVP M K S +++ +D+I LQS L+N
Sbjct: 160 LRKLQALVPNMDKQTSTS--DMLDLAVDHIKGLQSQLQN 196
>11_06_0014 -
19267601-19267831,19268338-19268454,19268733-19268890,
19269501-19269612,19269721-19269908,19270344-19270436,
19270521-19270708,19271635-19271720,19272662-19272811,
19273930-19274065,19274143-19274222,19275546-19275626,
19276114-19276245,19276490-19276610,19277457-19277518,
19277846-19277974,19278514-19278573,19278689-19278772,
19278852-19279532
Length = 962
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 421 GFYDPGSRVKSARWYLAQNEVPAAAFEGGVEVTRHKETMPRHPP 290
G +DP +R+ + +W LA P A GV + P HPP
Sbjct: 25 GHHDPSARLAANQWLLALQRSPQA---WGVATSLLAAPPPGHPP 65
>04_03_0242 +
13253268-13253317,13254522-13254573,13254654-13254730,
13254804-13254937,13255645-13255815,13255894-13256035,
13256257-13256443,13256932-13256998,13257846-13257892,
13258623-13258629,13258716-13258786,13259229-13259339,
13260404-13260466,13261050-13261187,13261721-13261826,
13262101-13262147,13262416-13262460,13262538-13262604,
13262683-13262737,13263008-13263214,13264723-13264810,
13264940-13265021,13265274-13265320,13265782-13265941,
13266058-13266224,13266360-13266659,13267144-13267200
Length = 914
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 341 LKGGRWDLVLRQIPSCRLHP*TRIIETKRHQRNKTNQTGRHRVKFDMKYD 490
L GRW L R SC+ T +IE + Q+ + + ++FDM D
Sbjct: 832 LVDGRWTLAFRDEQSCK-EAETMVIEEMKLQQGAVGEQLKLLLEFDMPED 880
>01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248
Length = 248
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +1
Query: 37 TMKAITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVI 216
T A+++ +G S RD ++Y S L+ L+P +K+S +
Sbjct: 52 TANAVSSGYGSGGSGSHRKLSHNAYERDRRKQLNELY-SSLRALLPDADHTKKLSIPTTV 110
Query: 217 QHVIDYICDLQSALEN 264
V+ YI +LQ +EN
Sbjct: 111 SRVLKYIPELQKQVEN 126
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 88 IASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVID--YICDLQSAL 258
I RV D A I+ + + +DLV + + LEVI+HV + C+ SAL
Sbjct: 104 IKIARVHAASDPSTASIEYFCTTAEDLVKENKQFDAVISLEVIEHVANPSGFCESLSAL 162
>12_02_0971 + 24949137-24950534
Length = 465
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 273 RWTVRRGGCLGIVSLCRVTSTPPSKAA 353
RW V G G V + RV+STP + AA
Sbjct: 407 RWVVYSGSLDGSVKVWRVSSTPDAAAA 433
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,758,491
Number of Sequences: 37544
Number of extensions: 367927
Number of successful extensions: 1216
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -