Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B10
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    34   0.065
U10414-9|AAA19072.1|  712|Caenorhabditis elegans Hypothetical pr...    31   0.60 
U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neur...    31   0.80 
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    30   1.4  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   5.6  
AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z96100-3|CAD60418.1|  893|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z96100-2|CAD60417.1|  912|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AY150817-1|AAN61051.1|  893|Caenorhabditis elegans ADR-1E protein.     27   7.4  
AY150816-1|AAN61050.1|  912|Caenorhabditis elegans ADR-1D protein.     27   7.4  
AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC084158-30|AAK68574.1|  184|Caenorhabditis elegans Neurogenin p...    27   9.8  

>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 34.3 bits (75), Expect = 0.065
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +1

Query: 142 MYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALE 261
           M  S+L+ L+P +P  +K+SK+E+++  I YI  L + L+
Sbjct: 50  MAFSQLRALLPTLPVEKKLSKIEILRFSIAYISFLDNLLQ 89


>U10414-9|AAA19072.1|  712|Caenorhabditis elegans Hypothetical
           protein F42A10.1 protein.
          Length = 712

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +1

Query: 121 GENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALE----NHPAVGQFD 288
           G+   +++ L  LQ  V     NR+I      QH +D +    SA+E    NHP   Q D
Sbjct: 535 GKTTLLKLLLDDLQPSVGLRNVNRRIRIAYFTQHHVDQLDMETSAIEVLMKNHPGKTQED 594

Query: 289 AEGALASFPCA 321
              AL  F  A
Sbjct: 595 YRAALGRFGLA 605


>U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neuro d
           homolog protein1 protein.
          Length = 192

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +1

Query: 91  ASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALENH 267
           A+GR +    G N  + M    L++ +P   +++K+SK+E ++   +YI  LQ  L+ +
Sbjct: 24  ANGRERARMHGLNNALDM----LREYIPITTQHQKLSKIETLRLARNYIDALQRMLQTN 78


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = -1

Query: 519 ILLILTVMSLSYFMSNLTRCRPVWLVLFLWCRLVSMILVQG 397
           ILL + V+S +Y  S+ T+ +P+ + + +WC + ++I+  G
Sbjct: 351 ILLTIFVLSANY-SSDRTKSKPIEMCVGVWCVIFALIITFG 390


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 176  KGTKSCNLDRYICISAFSPSRCLCTRPLAMAGTEAPVAQTAVIAFIVRV 30
            +G  SCN +   C   FS     CT  + +  T  PV  TA+  FI+ +
Sbjct: 1792 RGGSSCNQNICQCAVGFSVDNGRCTPTIEVRFTMLPVT-TAIPVFIIEL 1839


>AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical
           protein Y116A8C.11 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 196 ISKLEVIQHVID-YICDLQSALENHPAVGQFD 288
           +S+LEV +  +D  + DLQS LE +P + +FD
Sbjct: 209 LSQLEVQKRKLDKQLIDLQSKLERNPELVEFD 240


>Z96100-3|CAD60418.1|  893|Caenorhabditis elegans Hypothetical
           protein H15N14.1e protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 370 APNTILPTSPLN----QDHRNQTTPEKQNQPDRPTS 465
           A NT    +P++    Q  R QT P+KQN+P  P +
Sbjct: 68  AQNTYAAMNPISTFMQQQQRAQTFPQKQNKPKGPAA 103


>Z96100-2|CAD60417.1|  912|Caenorhabditis elegans Hypothetical
           protein H15N14.1d protein.
          Length = 912

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 370 APNTILPTSPLN----QDHRNQTTPEKQNQPDRPTS 465
           A NT    +P++    Q  R QT P+KQN+P  P +
Sbjct: 68  AQNTYAAMNPISTFMQQQQRAQTFPQKQNKPKGPAA 103


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 579 LCVDLEDFLRLPNVCP 532
           +C  LE  +RLPNVCP
Sbjct: 850 ICCGLESDVRLPNVCP 865


>AY150817-1|AAN61051.1|  893|Caenorhabditis elegans ADR-1E protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 370 APNTILPTSPLN----QDHRNQTTPEKQNQPDRPTS 465
           A NT    +P++    Q  R QT P+KQN+P  P +
Sbjct: 68  AQNTYAAMNPISTFMQQQQRAQTFPQKQNKPKGPAA 103


>AY150816-1|AAN61050.1|  912|Caenorhabditis elegans ADR-1D protein.
          Length = 912

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 370 APNTILPTSPLN----QDHRNQTTPEKQNQPDRPTS 465
           A NT    +P++    Q  R QT P+KQN+P  P +
Sbjct: 68  AQNTYAAMNPISTFMQQQQRAQTFPQKQNKPKGPAA 103


>AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical
           protein Y59A8A.2 protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 132 CVFTVTMPLHATTCDGRDGGAGRANCRYRF 43
           C++ +T+P H   C  R G   RA+ R R+
Sbjct: 155 CLYGLTLPPHCEFCPSRFGAFKRADIRGRW 184


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +2

Query: 404 TRIIETKRHQRNKTNQTGRHRVKFDMKYDKDITVNIKS 517
           TR   TKR  ++ ++++    +++D K D+D++   K+
Sbjct: 351 TRAAATKRSAKDASDESNEDEIEYDDKSDEDVSPRKKA 388


>AC084158-30|AAK68574.1|  184|Caenorhabditis elegans Neurogenin
           protein 1 protein.
          Length = 184

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 148 LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSAL 258
           L  L+ ++P +P   K++K+E ++   +YI  L   L
Sbjct: 82  LEHLRGILPALPDEPKMTKIETLRKAQEYIASLSFQL 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,391
Number of Sequences: 27780
Number of extensions: 300258
Number of successful extensions: 1004
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)