Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B10
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) / re...    31   0.75 
At1g02660.1 68414.m00216 lipase class 3 family protein contains ...    30   0.99 
At2g42280.1 68415.m05233 basic helix-loop-helix (bHLH) family pr...    30   1.3  
At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family pr...    28   4.0  
At4g15410.1 68417.m02355 UBX domain-containing protein low simil...    28   5.3  
At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family pr...    28   5.3  
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    28   5.3  
At4g34820.1 68417.m04941 expressed protein                             27   7.0  
At4g11850.1 68417.m01886 phospholipase D gamma 1 / PLD gamma 1 (...    27   7.0  
At4g11840.1 68417.m01885 phospholipase D gamma 3 / PLD gamma 3 (...    27   7.0  
At4g04070.1 68417.m00576 hypothetical protein low similarity to ...    27   7.0  
At5g57140.1 68418.m08530 calcineurin-like phosphoesterase family...    27   9.2  
At5g18330.1 68418.m02157 U-box domain-containing protein weak si...    27   9.2  
At2g16810.1 68415.m01927 F-box family protein (FBX8) contains F-...    27   9.2  

>At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) /
           reduced phytochrome signaling (REP1) / basic
           helix-loop-helix FBI1 protein (FBI1) / reduced
           sensitivity to far-red light (RSF1) / bHLH protein 26
           (BHLH026) (BHLH26) identical to SP|Q9FE22 Long hypocotyl
           in far-red 1 (bHLH-like protein HFR1) (Reduced
           phytochrome signaling) (Basic helix-loop-helix FBI1
           protein) (Reduced sensitivity to far-red light)
           [Arabidopsis thaliana]
          Length = 292

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +1

Query: 79  VPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSAL 258
           VP++     +R R  E    +M   KLQ LVP   K  K+S   V+   I+Y+ +LQ  L
Sbjct: 133 VPSVTRKGSKRRRRDEKMSNKM--RKLQQLVPNCHKTDKVS---VLDKTIEYMKNLQLQL 187

Query: 259 ENHPAVG 279
           +    VG
Sbjct: 188 QMMSTVG 194


>At1g02660.1 68414.m00216 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 713

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 258 GESPCRWTVRRGGCLGIVSLCRVTSTPPSKAAAGTSFCAKYHLADF 395
           G  P    V  GGC G+V + R T++ PS+      F  KY L  F
Sbjct: 12  GVIPAITAVGNGGCGGVVEV-RATASAPSQKRGPFGFSFKYPLTPF 56


>At2g42280.1 68415.m05233 basic helix-loop-helix (bHLH) family
           protein
          Length = 359

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +1

Query: 73  ASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQ 249
           A+ P   + RV+R R  E       + KLQ+LVP M K    S  +++   +DYI DLQ
Sbjct: 286 ATHPRSIAERVRRTRISER------MRKLQELVPNMDKQTNTS--DMLDLAVDYIKDLQ 336


>At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family
           protein
          Length = 362

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 148 LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALEN 264
           L KLQDLVP M K    S  +++   + +I  LQ  L+N
Sbjct: 309 LKKLQDLVPNMDKQTSYS--DMLDLAVQHIKGLQHQLQN 345


>At4g15410.1 68417.m02355 UBX domain-containing protein low
           similarity to XY40 protein [Rattus norvegicus]
           GI:2547025; contains Pfam profile PF00789: UBX domain
          Length = 421

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 336 PPSKAAAGTSFCAKYHLADFTLEPGS*KPNDTRETKPTRQA 458
           PPS   AG    ++ H  D+T    S  P+ +R   P+ +A
Sbjct: 60  PPSSTIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRA 100


>At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family
           protein (bHLH125) contains Pfam profile: PF00010
           helix-loop-helix DNA-binding domain;  supporting cDNA
           gi|20805889|gb|AF506369.1|
          Length = 259

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 109 RHRDGENA---EIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQ 249
           +HRD E     E+     +L+ L+PF     K S  + I   ++YI DLQ
Sbjct: 77  KHRDIERQRRQEVSSLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQ 126


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
            putative similar to SP|O75643 U5 small nuclear
            ribonucleoprotein 200 kDa helicase {Homo sapiens};
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2171

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 148  LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALENHPAVGQFDA 291
            L KL++L PF+ + R+ +  E + H I Y+ +  S+L+       F+A
Sbjct: 1618 LGKLEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEA 1665


>At4g34820.1 68417.m04941 expressed protein 
          Length = 321

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 7   IIQCSC*VTLTMKAITAVCATGASVPAIASGRVQRHRDGENAEIQMY 147
           +I C C  +L  +     CA G  V +  SGR Q      +  + +Y
Sbjct: 51  LIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSMALMVY 97


>At4g11850.1 68417.m01886 phospholipase D gamma 1 / PLD gamma 1
           (PLDGAMMA1) identical to phospholipase D gamma 1
           SP:Q9T053 from [Arabidopsis thaliana]
          Length = 858

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 373 AQNEVPAAAFEGGVEVTRHKETMPRHPPRRTVQ 275
           AQN     AF GG+++   +   P+HP  RT++
Sbjct: 380 AQNRRKIVAFVGGLDLCNGRFDTPKHPLFRTLK 412


>At4g11840.1 68417.m01885 phospholipase D gamma 3 / PLD gamma 3
           (PLDGAMMA3) identical to phospholipase D gamma 3
           sp:Q9T052 from [Arabidopsis thaliana]
          Length = 866

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 373 AQNEVPAAAFEGGVEVTRHKETMPRHPPRRTVQ 275
           AQN     AF GG+++   +   P+HP  RT++
Sbjct: 387 AQNRRKIVAFVGGLDLCNGRFDTPKHPLFRTLK 419


>At4g04070.1 68417.m00576 hypothetical protein low similarity to
           protective antigen [Streptococcus pyogenes] GI:8996050,
           fibrinogen-binding protein [Streptococcus equi]
           GI:3093478
          Length = 728

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +3

Query: 210 GDTTCDRLHLRPSISVGESPCRWTVRRG-GCLGIVSLCRVTSTPPS 344
           GD    R  L P +S    PC   + R   C  ++ LC+V +   S
Sbjct: 75  GDALLSRPRLSPDVSELRLPCAGVIHRAFSCHDLLQLCQVKTNARS 120


>At5g57140.1 68418.m08530 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 Calcineurin-like
           phosphoesterase
          Length = 397

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 552 RLPNVCPAFR--GILLILTVMSLSYFMSNLTRCRPVWLVLFLWC 427
           R PN+   FR  G   IL V  + + M  +TRCR V    F +C
Sbjct: 44  RSPNLPLRFRDDGTFKILQVADMHFGMGMITRCRDVLDSEFEYC 87


>At5g18330.1 68418.m02157 U-box domain-containing protein weak
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582198; contains Pfam
           profile PF04564: U-box domain
          Length = 445

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 287 TRRVPWHRFLVPRHL-NPALKGGRWDLV 367
           T++V +HRF++P HL N  +K   W L+
Sbjct: 108 TKQVLYHRFMIPNHLINEVIK--EWCLI 133


>At2g16810.1 68415.m01927 F-box family protein (FBX8) contains F-box
           domain PF:00646
          Length = 295

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 467 VKFDMKYDKDITVNIKSIPRNAGHTLGRRKK 559
           V FD++ ++    N   +PRNAG TL R++K
Sbjct: 261 VSFDVRSEE---FNTMQVPRNAGDTLPRQEK 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,085,653
Number of Sequences: 28952
Number of extensions: 278100
Number of successful extensions: 868
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)