Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B09
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    62   5e-11
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    29   0.47 
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    27   1.4  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   3.3  
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    25   4.4  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   7.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.6  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 61.7 bits (143), Expect = 5e-11
 Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
 Frame = +1

Query: 130 ISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARD-KTKVAINA 300
           +S K+ ID T    D I DV  FEKYL +R+KV+GKT NLG+ VV++R+  +K+A+ A
Sbjct: 8   VSNKYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIA 65


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = -3

Query: 260 T*LPRLFVLPSTLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIF-LLAPLPRILPPFTP 84
           T +P+L  L   +T  +  F++    R+    G ++++  L ++F +L  L RI+ PFTP
Sbjct: 714 TVVPQLLGLIEEMTNWYIRFNR---RRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTP 770

Query: 83  FL 78
           F+
Sbjct: 771 FI 772


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = +3

Query: 318 VTWSNFSYQARTVKIGTSILEISRNKHTAKKIKIVFLVHSLL 443
           + WS++S    T+ + + +L+I +++   + I ++ L H L+
Sbjct: 23  INWSHYSDGGFTLSLTSGLLQIRQHEELIQSINLLDLWHQLI 64


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +1

Query: 166 AEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARDKTKVAINAD*KLPKLRGVTSAIR 345
           +E+S  +V +  K        + ++ N  N   +A + TKV ++     PK+  V+    
Sbjct: 590 SEESYPNVKHISKLPLINDSSDNESGNQENDDAVANESTKVVVDNQQPQPKISTVSDTAV 649

Query: 346 PELS 357
           P +S
Sbjct: 650 PSMS 653


>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 307 KLPKLRGVTSAIRPELS 357
           K PKLR VT++I PEL+
Sbjct: 184 KFPKLRMVTASIDPELN 200


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 202 KYLKERVKVEGKTNNLGNHVVIARDKTKVAINAD*KLPKLRGVT---SAIRPELSKLVH 369
           K LK+++   G   + G+H V  R    + +N   K+  L G+    S +RP++ K VH
Sbjct: 95  KDLKDKLFYVGFRGSFGDHHVNPRTLRAMHLN---KMISLEGIVTRCSFVRPKVIKSVH 150


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 184  DVGNFEKYLKERVKVEGKTNNLGNH 258
            + GN +KY +  +KV GK ++   H
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTH 979


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,458
Number of Sequences: 5004
Number of extensions: 37217
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)