Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B09
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1662 + 28447419-28447666,28448429-28448573 69 1e-12
03_02_0963 - 12769715-12769859,12770639-12770889 67 6e-12
04_04_1004 + 30035704-30035934,30036030-30036287,30036382-300364... 29 2.5
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 27 5.7
11_06_0037 - 19478885-19480472,19483125-19483267 27 7.5
11_01_0763 + 6402901-6403971,6404581-6404826 27 7.5
10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622 27 7.5
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 27 10.0
>07_03_1662 + 28447419-28447666,28448429-28448573
Length = 130
Score = 69.3 bits (162), Expect = 1e-12
Identities = 29/58 (50%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = +1
Query: 133 SLKFTIDCTHPAEDSILDVGNFEKYLKERVKVE-GKTNNLGNHVVIARDKTKVAINAD 303
S+ F IDC+ P ED I+++ + EK+L+ER+KV GK NLG+ V + RDKTKV + +D
Sbjct: 20 SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSD 77
>03_02_0963 - 12769715-12769859,12770639-12770889
Length = 131
Score = 67.3 bits (157), Expect = 6e-12
Identities = 28/58 (48%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Frame = +1
Query: 133 SLKFTIDCTHPAEDSILDVGNFEKYLKERVKVE-GKTNNLGNHVVIARDKTKVAINAD 303
S+ F IDC P +D I+++ + EK+L+ER+KV GK NLG V ++RDKTKV + +D
Sbjct: 21 SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKTKVTVTSD 78
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 436 PFSKRYLKYLT 468
PFSKRYLKYLT
Sbjct: 80 PFSKRYLKYLT 90
>04_04_1004 +
30035704-30035934,30036030-30036287,30036382-30036479,
30036574-30037137,30037232-30037484,30037576-30037758,
30037839-30038465
Length = 737
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -2
Query: 147 GKFKANLPLGTFAANFATFYSFLTSLLVNWPFFA 46
G + L +G F ++AT SFL S LV +PFFA
Sbjct: 253 GSGMSGLGVGAFTLDWATVVSFLGSPLV-YPFFA 285
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 241 NNLGNHVVIARDKTKVAINAD*KLPKLRGVTSAIRPELSKLV 366
+ L N VVI +K ++ + +LP+ + + SA+RP S+LV
Sbjct: 679 SRLVNAVVIDANKNQIKSTSVPQLPQQKELLSALRPYHSRLV 720
>11_06_0037 - 19478885-19480472,19483125-19483267
Length = 576
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 224 LTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIFLLAPLPRILPPFTPFLPVFW 66
L RS+ L S+++ S GC +S V L FLL L + P + +P FW
Sbjct: 365 LPRSWHSSCTLDGSKLVVSGGCTESGVLLSDTFLL-DLTKEKPAWKE-IPTFW 415
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 75 W*ERSKRWQNSRQRCQEE 128
W ER RW R RC+EE
Sbjct: 265 WRERRGRWWRRRPRCEEE 282
>10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622
Length = 313
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 75 W*ERSKRWQNSRQRCQEE 128
W ER RW R RC+EE
Sbjct: 254 WRERRGRWWRRRPRCEEE 271
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 346 PELSKLVHPFWRLAGINTQPKKLKLSSWYIPFSKRYL 456
P LSK+++ G +K+ + SW +P+ +RY+
Sbjct: 2296 PALSKVIYREAIFYGTVDNREKVTVISWLLPYMQRYI 2332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,729
Number of Sequences: 37544
Number of extensions: 239451
Number of successful extensions: 656
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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