Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B09
(469 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15) 30 0.83
SB_58203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_7486| Best HMM Match : Frizzled (HMM E-Value=0) 28 3.4
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) 28 4.4
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38) 28 4.4
SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22) 27 5.9
SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39) 27 7.7
SB_3626| Best HMM Match : RelB (HMM E-Value=0.84) 27 7.7
>SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15)
Length = 711
Score = 30.3 bits (65), Expect = 0.83
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 148 IDCTHPAEDSILDVGNFEKYLKERV--KVEGKTNNLGNHVV 264
+ C H +E S L + + Y ++ KVE NNL NHV+
Sbjct: 376 LPCVHSSETSELFAQDLKMYYVQKAFSKVEPMLNNLSNHVI 416
>SB_58203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -3
Query: 245 LFVLPSTLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIFLLAPLPR-ILPPFTPFLPVF 69
LF+ L +++Y R A V +++ ++ L P+ I PF P + F
Sbjct: 249 LFIGSVALNETYEYMFDENVKRFGQQAWVVAAIIATEVLICLKFDPQTIFTPFPPHITAF 308
Query: 68 WLTGL 54
W GL
Sbjct: 309 WAIGL 313
>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2484
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 174 ILSRVCAVNGKFKANLPLGTFAANFATFYSFLTSLL 67
++ CA+ G LP+ A+NF+ FY++ + L
Sbjct: 1999 VVGSACAICGVLVIALPVSVVASNFSIFYTYAKARL 2034
>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1702
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 340 IRPELSKLVHPF--WRLAGINTQPKKLKLSSWYIPFSKRYLKY 462
IR +SK++H W Q + +K Y+ + K+Y+KY
Sbjct: 1075 IRDPVSKVLHSSTCWHATTAKYQEQYVKYQKQYVKYQKQYVKY 1117
>SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 535
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +3
Query: 258 RCHRPGQDKSRYQRRLKVA*VTWSNFSYQARTVKIGTSILEISRNKHTAKKI 413
RC+ G K+ + + + WS F + + T+ + T ++E R K+ + I
Sbjct: 199 RCNEDGIFKTSDKETMDIWITIWSIFCFISTTITLTTFLIETGRFKYPERSI 250
>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
Length = 934
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 183 QDAILSRVCAVNGKFKANLPLGTFAANFATFYS 85
Q I+ +CAV G LP+ +NF+ +YS
Sbjct: 7 QGQIVGSLCAVCGVLMIALPVPVIVSNFSLYYS 39
>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 174 ILSRVCAVNGKFKANLPLGTFAANFATFYSF 82
++ VCA++G LP+ A+NF+ + S+
Sbjct: 386 LVGSVCAISGVLMIALPVSVVASNFSLYNSY 416
>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
Length = 1851
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 174 ILSRVCAVNGKFKANLPLGTFAANFATFY 88
+LS CA+ G LP+ TF +NF Y
Sbjct: 1790 LLSAACAIFGAITLALPVLTFVSNFNKLY 1818
>SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)
Length = 256
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 174 ILSRVCAVNGKFKANLPLGTFAANFATFYS 85
I+ +CA++G LP+ +NF FY+
Sbjct: 167 IVGALCAISGVLTIALPVPVIVSNFENFYN 196
>SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39)
Length = 605
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 174 ILSRVCAVNGKFKANLPLGTFAANFATFY 88
I+ +CA+ G LP+ NF+T+Y
Sbjct: 392 IIGSLCAICGVLIIGLPVSVIGNNFSTYY 420
>SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)
Length = 496
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 286 VAINAD*KLPKLRGVTSAIRPELSKLVHPFWRLAGIN----TQPKKLKLSSWYIPFSKRY 453
+ + A L +L G + P +KL L+G N + K L +SW+ SK+Y
Sbjct: 293 IELKASKTLLRLPGKPDTVHPLHNKLSLLVCHLSGQNLDIPSSAKDLIAASWWNSTSKQY 352
Query: 454 LKYLT 468
YLT
Sbjct: 353 QTYLT 357
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,559,512
Number of Sequences: 59808
Number of extensions: 280569
Number of successful extensions: 825
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -