Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B09
(469 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal prote... 53 9e-08
Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical p... 29 2.2
Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF005246-1|AAB95119.1| 556|Caenorhabditis elegans voltage-depen... 29 2.2
AF045644-7|AAC02603.1| 262|Caenorhabditis elegans Mechanosensor... 28 2.9
U58760-3|AAL02443.1| 53|Caenorhabditis elegans Ribosomal prote... 27 5.1
Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical p... 27 8.9
Z81546-6|CAB04457.1| 425|Caenorhabditis elegans Hypothetical pr... 27 8.9
>U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 22, isoform a protein.
Length = 130
Score = 53.2 bits (122), Expect = 9e-08
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = +1
Query: 130 ISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNL-GNHVVIARDKTKVAI 294
+ LKF ++C +P ED IL + + E +L E++KV GKT +L N+V + K+KV++
Sbjct: 19 VHLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSV 74
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 433 IPFSKRYLKYLT 468
+PFSKRYLKYLT
Sbjct: 78 VPFSKRYLKYLT 89
>Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical
protein R186.5 protein.
Length = 479
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 174 ILSRVCAVNGKFKANLPLGTFAANFATFYS 85
++ +CA+ G LP+ +NFA FYS
Sbjct: 391 LIGSICALAGVLTIALPVPVIVSNFAMFYS 420
>Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 174 ILSRVCAVNGKFKANLPLGTFAANFATFYS 85
++ +CAV G LP+ +NFA FYS
Sbjct: 421 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 450
>Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 174 ILSRVCAVNGKFKANLPLGTFAANFATFYS 85
++ +CAV G LP+ +NFA FYS
Sbjct: 421 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 450
>Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 174 ILSRVCAVNGKFKANLPLGTFAANFATFYS 85
++ VCA+ G LP+ +NFA FYS
Sbjct: 489 LVGSVCALMGVLTIALPVPVIVSNFAMFYS 518
>Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 174 ILSRVCAVNGKFKANLPLGTFAANFATFYS 85
++ VCA+ G LP+ +NFA FYS
Sbjct: 489 LVGSVCALMGVLTIALPVPVIVSNFAMFYS 518
>AF005246-1|AAB95119.1| 556|Caenorhabditis elegans
voltage-dependent potassium channelalpha subunit
protein.
Length = 556
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 174 ILSRVCAVNGKFKANLPLGTFAANFATFYS 85
++ +CAV G LP+ +NFA FYS
Sbjct: 419 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 448
>AF045644-7|AAC02603.1| 262|Caenorhabditis elegans Mechanosensory
abnormality protein17 protein.
Length = 262
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 455 RYLFEKGMYQEDNFNFFGCVFIPANLQNGCTNFDSSGLIAEVTPRNLG 312
+Y K ++Q NF F +F+ + +NG G +TPR LG
Sbjct: 157 KYGLIKPVWQNTNFVVFEELFLALSAENGIEKPPPDGWRRPMTPRRLG 204
>U58760-3|AAL02443.1| 53|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 22, isoform b protein.
Length = 53
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 130 ISLKFTIDCTHPAEDSILDV 189
+ LKF ++C +P ED IL +
Sbjct: 19 VHLKFNVECKNPVEDGILRI 38
>Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical
protein F59A1.11b protein.
Length = 321
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 114 FAANFATFYSFLTSLLVNWPFFATGFFXLPS 22
+A +YSFL+++L+ W GFF PS
Sbjct: 266 YALVITEWYSFLSAVLIAWSI--AGFFKAPS 294
>Z81546-6|CAB04457.1| 425|Caenorhabditis elegans Hypothetical
protein F53A2.9 protein.
Length = 425
Score = 26.6 bits (56), Expect = 8.9
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +1
Query: 400 QPKKLKLSSWYIPFSKRYLKY 462
QP+KL+LS+ ++ + RY++Y
Sbjct: 135 QPEKLRLSATFVERTSRYIEY 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,768,740
Number of Sequences: 27780
Number of extensions: 214804
Number of successful extensions: 530
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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