Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B08
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    27   3.1  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.2  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    25   7.2  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       25   7.2  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   7.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.5  

>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 512 PLSQKPAYLFPPCSYWVCDSRELVISVQH 426
           PL QK + +  P  YW   S+ELV  V H
Sbjct: 36  PLIQKLSAVQQPIMYWANVSKELVQQVYH 64


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 425 NAAPKLPVLYYHIPSMSRVEINMPAFVKEATASYIKLQGSSSSLQMTLTK 574
           ++A KL       P  +R   + P F + A+ S  K + SSSS Q T+ +
Sbjct: 676 SSASKLLYARLQAPEHAR-NFSSPPFTRPASPSSSKFRFSSSSFQSTIRR 724


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 86  LNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKT 256
           L DD++   G +   AK L DNG K+V    T G     A+    +   E V V+ T
Sbjct: 221 LVDDMADTCGTLGLAAKTLKDNGAKAVYAIVTHGILSGKAIKVINESALEKVIVTNT 277


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 392 AELVSYVELVANAAPKLPVLYYHIPSMSRVEINMPAF 502
           A +    + + N  P +  +YY +P+    EIN+  F
Sbjct: 231 ATMYKMADTIINTYPAINEVYYALPNKHYFEINLAPF 267


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 128 YAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTT 259
           YAK     G+++ LV  +  E +S  +    +V+ +  ++SKT+
Sbjct: 74  YAKARQKPGVRNHLVSASVAEVVSCGILAPAEVVRQRAQISKTS 117


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -1

Query: 345 STPTSWQYAARSKTSASGAPPTCT*ICSPVVLDTLTHSVITFFLSDTASDICSPVVPPT 169
           +T T+        T+ + APPT     +  V+   TH   T  +  T     + VVPPT
Sbjct: 91  NTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPT 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,151
Number of Sequences: 5004
Number of extensions: 57202
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)