Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B08
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0046 + 10114402-10114535,10116438-10117365 43 2e-04
04_04_0873 - 28905240-28906061 40 0.001
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115... 32 0.34
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919... 29 4.2
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864... 28 5.6
01_05_0722 + 24598426-24598649,24599113-24599219,24599319-245993... 28 5.6
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595 28 7.4
05_01_0074 + 506803-507963 27 9.8
>04_03_0046 + 10114402-10114535,10116438-10117365
Length = 353
Score = 43.2 bits (97), Expect = 2e-04
Identities = 41/156 (26%), Positives = 66/156 (42%)
Frame = +2
Query: 74 VFTPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSK 253
V TP D + A S D G + V+VGGTTGE ++ + +I V
Sbjct: 60 VKTPYLPDGRFDLEAYDSLINMQIDGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFG 119
Query: 254 TTGLHIQVQVGGAPLADVLDLAAYCQDVGVDSLLTLPELYFKPATVAELVSYVELVANAA 433
+ + G + + VG+ + L + Y K ++ L+S+ E V
Sbjct: 120 AK-VKVVGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK-TSIEGLISHFEAV---L 174
Query: 434 PKLPVLYYHIPSMSRVEINMPAFVKEATASYIKLQG 541
P P + Y++P SR ++P V EA +S+ L G
Sbjct: 175 PMGPTIIYNVP--SRTGQDIPPAVIEAVSSFTNLAG 208
>04_04_0873 - 28905240-28906061
Length = 273
Score = 40.3 bits (90), Expect = 0.001
Identities = 35/132 (26%), Positives = 60/132 (45%)
Frame = +2
Query: 146 DNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGAPLADVLDLAAY 325
+ G + V+VGGTTGE ++ + +I V T + + G + +
Sbjct: 4 EGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGTK-IKVVGNTGSNSTREAIHATEQ 62
Query: 326 CQDVGVDSLLTLPELYFKPATVAELVSYVELVANAAPKLPVLYYHIPSMSRVEINMPAFV 505
VG+ + L + Y K +V L+S+ E V P P + Y++P SR ++P V
Sbjct: 63 GFAVGMHAALHINPYYGK-TSVEGLISHFEAV---LPMGPTIIYNVP--SRTGQDIPPAV 116
Query: 506 KEATASYIKLQG 541
EA +S+ + G
Sbjct: 117 IEAVSSFSNMAG 128
>11_06_0738 - 26807046-26807129,26807720-26807957,26809374-26811509,
26812145-26813253
Length = 1188
Score = 32.3 bits (70), Expect = 0.34
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 15/140 (10%)
Frame = +2
Query: 68 PPVFTPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKK----VITE 235
PP L+ +V + + Y F+ + + VLV G+ S+ + D K V
Sbjct: 642 PPTSMRLSQVRTVAFFGVLKYMPFVMEFRLIKVLVLHILGDEDSIGIFDLTKISELVRLR 701
Query: 236 WVKVSKTTGLHIQVQVGGAPLADVLDLAAYCQDVGVDSL------LTLPELYFKPATVAE 397
++KV+ + + Q+ G P + L + +V D LTLP P+ +
Sbjct: 702 YLKVTSNVTVKLPTQMQGLPYLETLKIDGTISEVPTDIYLPRLLHLTLPAKTNLPSGIVH 761
Query: 398 LVS-----YVELVANAAPKL 442
+ S Y +L N+A L
Sbjct: 762 MTSLRTIGYFDLSCNSAENL 781
>03_02_0528 +
9189215-9189330,9190111-9190204,9190654-9190743,
9191601-9191717,9192187-9192259,9192335-9192453,
9192569-9192690,9192777-9192953,9193189-9193333,
9193458-9193636,9193742-9193991
Length = 493
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = +2
Query: 341 VDSLLTLPELYFKPAT----VAELVSYVELVANA 430
V SL+TLP + F+P T +AEL+ Y EL+ A
Sbjct: 117 VTSLVTLPVIIFEPMTMLQKMAELMEYCELLDKA 150
>12_02_1066 +
25785749-25785868,25785953-25786141,25786250-25786414,
25786649-25786999,25787924-25788001,25788137-25788277,
25788415-25788459,25788597-25788763,25788833-25788911,
25788985-25789067,25789219-25789348,25789432-25789564,
25789955-25790103,25790339-25790534,25791086-25791288
Length = 742
Score = 28.3 bits (60), Expect = 5.6
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Frame = +2
Query: 275 VQVGGAPLADVLDLAAYCQDVGVDSLLTLPELYFKPATVAELVSYVELVANAAPKLPVLY 454
V V P+A LA+YC G+D L +Y+ A AELV V++ LPV
Sbjct: 54 VVVAPPPVAAAAKLASYCWTAGLDGFL----VYWDFA-AAELVRKVQV------GLPVHS 102
Query: 455 YHIPSMSRV----EINMP-AFVK-EATA--SYIKLQGSSSSLQMTLTKEPRSYVLSXR 604
IP+++R+ EI P AFV E T+ S KL+G +T ++ S + R
Sbjct: 103 MVIPNIARISRGAEIYTPFAFVSVEDTSKPSNEKLRGQLRIYDLTKGRQVGSLLAETR 160
>01_05_0722 +
24598426-24598649,24599113-24599219,24599319-24599374,
24599469-24599675,24599757-24599963,24600037-24600123,
24600167-24600208,24600209-24600304,24600406-24600621,
24600693-24600875,24601014-24601241
Length = 550
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 146 DNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGAPLADVL 310
D G+ + VGG G H+S D+ V +K K G QV A L +L
Sbjct: 55 DAGMSAAEVGGVVGSHLSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIIL 109
>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
Length = 904
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 366 SGSVNNESTPTSWQYAARSKTSASGAPPTCT 274
S S+N S T++ Y + S T +GAP +CT
Sbjct: 83 SSSIN--SIATAYSYRSMSDTHGTGAPTSCT 111
>05_01_0074 + 506803-507963
Length = 386
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 644 GANSVSAPRNISWPSXRERKTWAPSLR 564
G N+ APR ISW S + R T ++R
Sbjct: 297 GFNNGGAPRRISWGSRQSRSTERSAIR 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,196,598
Number of Sequences: 37544
Number of extensions: 393434
Number of successful extensions: 976
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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