Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B08
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                30   1.4  
SB_14102| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0024)          29   4.3  
SB_51819| Best HMM Match : TGF_beta (HMM E-Value=1.9)                  28   5.7  
SB_6576| Best HMM Match : TPR_2 (HMM E-Value=1.2)                      28   7.6  

>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
 Frame = +2

Query: 353  LTLPELYFK--PATVAELVSYVELVANAAPKLPVLYYHIPS----MSRVEINMPAFVKEA 514
            +T P +Y K  P +V  L + V  +  +A +LPV   H+P+    +     ++PA V   
Sbjct: 1343 VTHPPVYVKHLPTSVMHLHASVTHLPASATQLPVSVKHLPTSVMHLQASVTHLPASVTHL 1402

Query: 515  TASYIKLQGSSSSLQMTLTKEPRS 586
             AS   L  S + L  + T  P S
Sbjct: 1403 PASVTHLPASVTHLPSSATHLPAS 1426


>SB_14102| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0024)
          Length = 515

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 535 KFDIRSCSLFHKSRHIYFHP 476
           KF  R  S++HK  HI+ HP
Sbjct: 86  KFSFRPISIWHKRGHIFLHP 105


>SB_51819| Best HMM Match : TGF_beta (HMM E-Value=1.9)
          Length = 696

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 344 DSLLTLPELYFKPATVAELVSYVELVANAAPKLPVLYYHIPSMSRVEIN 490
           D L+ LPE Y++P  + E V+      N+A +   L+Y  P++  V+++
Sbjct: 1   DCLILLPEAYYRPTVLKEHVTN-PCEVNSADQ-HCLHYRYPNIDGVDVS 47


>SB_6576| Best HMM Match : TPR_2 (HMM E-Value=1.2)
          Length = 116

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 365 ELYFKPATVAELVSYVELVANAAPKLPVLYY 457
           ELY K  T  E  S ++LVAN   K+   YY
Sbjct: 10  ELYLKMETSGESFSLLQLVANDCYKMGQFYY 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,749,405
Number of Sequences: 59808
Number of extensions: 443042
Number of successful extensions: 934
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)