Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B08
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45440.1 68415.m05652 dihydrodipicolinate synthase 2 (DHDPS2)...    31   0.66 
At3g04050.1 68416.m00427 pyruvate kinase, putative similar to py...    30   1.5  
At5g15210.1 68418.m01782 zinc finger homeobox family protein / Z...    29   2.7  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    28   4.7  
At5g52570.1 68418.m06528 beta-carotene hydroxylase, putative sim...    27   8.2  
At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)...    27   8.2  
At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)...    27   8.2  
At1g50970.1 68414.m05730 membrane trafficking VPS53 family prote...    27   8.2  
At1g16070.1 68414.m01928 tubby family protein similar to Tubby r...    27   8.2  
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A...    27   8.2  

>At2g45440.1 68415.m05652 dihydrodipicolinate synthase 2 (DHDPS2)
           identical to dihydrodipicolinate synthase 2 (DHDPS2)
           [Arabidopsis thaliana] GI:11066382
          Length = 365

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 30/143 (20%), Positives = 57/143 (39%)
 Frame = +2

Query: 80  TPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTT 259
           TP   D   +  A          NG + V+VGGTTGE   ++  +   +I   V     +
Sbjct: 74  TPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGS 133

Query: 260 GLHIQVQVGGAPLADVLDLAAYCQDVGVDSLLTLPELYFKPATVAELVSYVELVANAAPK 439
            + +    G     + +        VG+ + L +   Y K  ++  L+++ + V +    
Sbjct: 134 -IKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK-TSIEGLIAHFQSVLHMG-- 189

Query: 440 LPVLYYHIPSMSRVEINMPAFVK 508
            P + Y++P  +  +I   A  K
Sbjct: 190 -PTIIYNVPGRTGQDIPPRAIFK 211


>At3g04050.1 68416.m00427 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
           SWISS-PROT:Q42954
          Length = 510

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
 Frame = +2

Query: 149 NGIKSVLVGGTT--GEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQ-VGGAPLADVLDLA 319
           +G   V++ G T  G H   AV    ++  E         +H ++Q +   PL+ +  LA
Sbjct: 320 DGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDTMHKKIQDIVSLPLSPIESLA 379

Query: 320 AYCQDVGVDSLLTLPELYFKPATVAELVSY-VELVANAAPKLPVLYYHIPSMSRVE 484
           A        ++ T   L      V     Y VELVA   P +P+L   +P ++R +
Sbjct: 380 A-------SAVSTARSLCAAAIVVLTKGGYTVELVAKYRPSVPILSVIVPEITRTD 428


>At5g15210.1 68418.m01782 zinc finger homeobox family protein /
           ZF-HD homeobox family protein various predicted
           proteins, Arabidopsis thaliana
          Length = 271

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 167 LVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGA-PLADVLDLAAYCQDVGV 343
           L GG  G + ++ +S RK+  T++ +  K        +VG   P AD + +  +C+++GV
Sbjct: 164 LSGGRGGANTAVPMS-RKRFRTKFSQYQKEKMFEFSERVGWRMPKADDVVVKEFCREIGV 222

Query: 344 D 346
           D
Sbjct: 223 D 223


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = -3

Query: 514 SLFHKSRH-IYFHPA--HTGYVIVENW*FRCSISDQFYVGDQFSHC---CRFEIQLRKC 356
           SL  K  H I+ HP   H   +  EN  F CS+ +Q   G  +  C   C F+I + KC
Sbjct: 276 SLPRKMEHGIHIHPLTIHVDAMNNENGFFTCSVCNQHSCGFMYKCCQEDCEFKIDV-KC 333


>At5g52570.1 68418.m06528 beta-carotene hydroxylase, putative
           similar to GI:1575296, beta-carotene hydroxylase
          Length = 303

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 344 DSLLTLPELYFKPATVAELVSYVELVANAAPKLPVLYY 457
           DSL  + E + KP   A  ++ V  + NA P + +LYY
Sbjct: 161 DSLWNMHESHHKPREGAFELNDVFAITNAVPAIGLLYY 198


>At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)
           (DHDPS) (DHPS1) identical to SP|Q9LZX6
           Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
          Length = 365

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 80  TPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGE 190
           TP   D   +  A         +NG + V+VGGTTGE
Sbjct: 74  TPYLPDGRFDLQAYDDLVNTQIENGAEGVIVGGTTGE 110


>At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)
           (DHDPS) (DHPS1) identical to SP|Q9LZX6
           Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
          Length = 364

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 80  TPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGE 190
           TP   D   +  A         +NG + V+VGGTTGE
Sbjct: 73  TPYLPDGRFDLQAYDDLVNTQIENGAEGVIVGGTTGE 109


>At1g50970.1 68414.m05730 membrane trafficking VPS53 family protein
           contains Pfam domain PF04100: Vps53-like, N-terminal
          Length = 569

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 410 VELVANAAPKLPVLYYHIPSMSRVEINMPAFVKEATASYIKL 535
           V L+   A  + ++   +PS++R        VK ATASY+KL
Sbjct: 394 VYLMLLDAHDMKMILLKVPSLARQPEASALLVKTATASYVKL 435


>At1g16070.1 68414.m01928 tubby family protein similar to Tubby
           related protein 1 (Tubby-like protein 1)
           (Swiss-Prot:Q9Z273) [Mus musculus]; low similarity to
           Tubby related protein 1 (Tubby-like protein 1)
           (Swiss-Prot:O0029) {Homo sapiens}; similar to
           phosphodiesterase (GI:467578) [Mus musculus]; contains
           Pfam profile PF01167: Tub family
          Length = 397

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +2

Query: 437 KLPVLYYHIPSMSRVEINMPAFVKEATASYIKLQGSSSSLQMTLTKEPRSYVL 595
           K+  L   IP  +++        ++   + +++Q S  + Q+TLT+ PR  +L
Sbjct: 306 KIQKLCSRIPHYNKISKQHELDFRDRGRTGLRIQSSVKNFQLTLTETPRQTIL 358


>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
           (PP2A) 65 kDa regulatory subunit, putative similar to
           protein phosphatase 2A 65 kDa regulatory subunit
           GI:683502 from [Arabidopsis thaliana]
          Length = 587

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 228 ITFFLSDTASDICSPVVP-PTRTDLIPLSAK 139
           + + +++   ++C  V P PTRTDL+P  A+
Sbjct: 257 VRYMVANQLYELCEAVGPEPTRTDLVPAYAR 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,325,811
Number of Sequences: 28952
Number of extensions: 304315
Number of successful extensions: 825
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)