Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B07
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    49   7e-07
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    28   1.4  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.3  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   5.8  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    25   7.6  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    25   7.6  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   7.6  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 16/187 (8%)
 Frame = +1

Query: 166 FRGVPYAKQPVGHLRFQELQPLEP-QEYYIDATEEGPACPQT--DVLYGRIMKPK-GFSE 333
           F G+ YAK PVG LR++    LE   +Y  D  +    CPQ   +    ++  P   + E
Sbjct: 21  FTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKYDE 80

Query: 334 ACIHANIHVPLEALPTKXXXXXXXXXXXXXXXXXTLGLPILVFIHGGGYSFGSGDADLH- 510
            C+  NI VP    P +                   G P+L FIHGG    G+    LH 
Sbjct: 81  DCLFLNIWVPAGEKPAE-------------------GWPVLYFIHGGWLQVGN---PLHY 118

Query: 511 ---GPEYLVS----RNIIVITFNYRLNVFGFLS----LNSTSIPGNNGLRDMVTLLKWVK 657
               P+ L +       I+++  +RLN+FGFL+    L       N G  D    L+W  
Sbjct: 119 RQCDPQDLQADGSPAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTY 178

Query: 658 RNARAFG 678
           ++  +FG
Sbjct: 179 KHIESFG 185


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 380 VGRASRGTWMLAWMHASLKPLGFIIRPYSTSV 285
           +G+  R  W++ W   +++P   +IRP STS+
Sbjct: 242 LGKTKR--WIICWSFQAMRPHNELIRPSSTSL 271


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 568 NVFGFLSLNSTSIPGNNGLRDMVTLLKWV 654
           N+ G+LSL+ +   GN+ +     LL WV
Sbjct: 49  NISGYLSLSKSKALGNSSVAGSDILLSWV 77


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 420 IESRRYSRPSYISVHTRWRVLFRIRGC 500
           +E + YS P + + HT WR++   +GC
Sbjct: 64  LEDKTYS-PLFKAGHTTWRIVLFPKGC 89


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 442 REYRLDSMRSSPDRQRHSVTSLAEPRGARGCWRGCT 335
           R Y + S R S    +  ++ L E  GARG W+G T
Sbjct: 145 RSYTIHSKRFSI---KSIISELWEKEGARGLWKGHT 177


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 152 PPSSAHRVTPHTHPDSVRAITLH 84
           P  S HRVT H  P   R+I  H
Sbjct: 121 PAGSVHRVTTHMAPIPARSIGSH 143


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 442 GLPILVFIHGGGYSFGSGDADLHGPEYLVSR-NIIVITFNYRL 567
           G P  ++ HGGG+  G+ + +     ++  +   +V+  +YRL
Sbjct: 99  GWPCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRL 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,492
Number of Sequences: 5004
Number of extensions: 60715
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)