Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B07
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pin... 33 0.23
At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pin... 33 0.23
At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pin... 32 0.30
At5g62180.1 68418.m07805 expressed protein similar to PrMC3, Pin... 31 0.93
At4g10850.1 68417.m01767 nodulin MtN3 family protein similar to ... 31 0.93
At1g66770.1 68414.m07590 nodulin MtN3 family protein contains Pf... 31 0.93
At5g23530.1 68418.m02761 expressed protein contains similarity t... 30 1.2
At3g27320.1 68416.m03414 expressed protein low similarity to PrM... 29 2.8
At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pin... 29 2.8
At1g49640.1 68414.m05567 hypothetical protein similar to PrMC3 [... 29 2.8
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 28 4.9
At5g48890.1 68418.m06048 hypothetical protein 28 4.9
At5g14310.1 68418.m01673 expressed protein low similarity to PrM... 28 4.9
At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containi... 28 4.9
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 28 4.9
At2g45600.1 68415.m05670 expressed protein low similarity to PrM... 28 4.9
At1g49660.1 68414.m05569 expressed protein 28 4.9
At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pin... 28 6.5
At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pin... 28 6.5
At1g04910.1 68414.m00488 expressed protein contains Pfam PF03138... 27 8.6
>At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGD-ADLHG--PEYLVSRNIIVITFNYRL 567
LP++VF HGGG+ FGS H S N +V++ +YRL
Sbjct: 76 LPVVVFFHGGGFCFGSRSWPHFHNFCLTLASSLNALVVSPDYRL 119
>At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGD-ADLHG--PEYLVSRNIIVITFNYRL 567
LP++VF HGGG+ FGS H S N +V++ +YRL
Sbjct: 76 LPVVVFFHGGGFCFGSRSWPHFHNFCLTLASSLNALVVSPDYRL 119
>At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 344
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGDADLHG---PEYLVSRNIIVITFNYRL 567
LP+LV+ HGGG+ GS + V ++++ NYRL
Sbjct: 92 LPLLVYFHGGGFCVGSAAWSCYHDFLTSLAVKARCVIVSVNYRL 135
>At5g62180.1 68418.m07805 expressed protein similar to PrMC3, Pinus
radiata, GI:5487873
Length = 327
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGDADL-HG--PEYLVSRNIIVITFNYRL 567
LPI+V+ HGGG+ S D L H E N IV++ +YRL
Sbjct: 80 LPIVVYYHGGGFILCSVDMQLFHDFCSEVARDLNAIVVSPSYRL 123
>At4g10850.1 68417.m01767 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 258
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 125 PHTHPDSVRAITLHGLGFGVASTFITIIKVNNVQAKYR 12
P HPDS IT++G G + F+TI V + K R
Sbjct: 65 PTVHPDSTLVITINGTGILIEIVFLTIFFVYCGRQKQR 102
>At1g66770.1 68414.m07590 nodulin MtN3 family protein contains Pfam
PF03083 MtN3/saliva family; similar to LIM7 (cDNAs
induced in meiotic prophase in lily microsporocytes)
GI:431154 from [Lilium longiflorum]
Length = 261
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 125 PHTHPDSVRAITLHGLGFGVASTFITIIKV 36
P HPDS +T+ G+G + F+TI V
Sbjct: 65 PMVHPDSTLLVTISGIGITIEIVFLTIFFV 94
>At5g23530.1 68418.m02761 expressed protein contains similarity to
PrMC3 [Pinus radiata] GI:5487873
Length = 335
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGDA---DLHGPEYLVSRNIIVITFNYRL 567
+P++VF HGGG++F S +A D + VI+ NYRL
Sbjct: 87 IPVVVFFHGGGFAFLSPNAYPYDNVCRRFARKLPAYVISVNYRL 130
>At3g27320.1 68416.m03414 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 460
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGDA---DLHGPEYLVSRNIIVITFNYRL 567
LP+++ HGGG+ GS D+ D +IIV+ YRL
Sbjct: 166 LPVMLQFHGGGWVSGSNDSVANDFFCRRMAKHCDIIVLAVGYRL 209
>At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 336
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGDADLHGPEYL----VSRNIIVITFNYRL 567
LP++V+ HGGG+ GS + L E+L +V++ NYRL
Sbjct: 89 LPLIVYFHGGGFCVGSA-SWLCYHEFLARLSARSRCLVMSVNYRL 132
>At1g49640.1 68414.m05567 hypothetical protein similar to PrMC3
[Pinus radiata] GI:5487873
Length = 315
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGDADLHG---PEYLVSRNIIVITFNYRL 567
+P+L++ HGG Y S + ++ E +++ N + ++ YRL
Sbjct: 74 IPLLIYFHGGAYIIQSPFSPVYHNYLTEVVITANCLAVSVQYRL 117
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 155 RPPSSAHRVTPHTHPDSVRAITLHGLGFGVA 63
+PP R PH H D VR I+L +G G A
Sbjct: 181 KPPPIGMR-WPHMHADQVRGISLREIGGGFA 210
>At5g48890.1 68418.m06048 hypothetical protein
Length = 173
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 183 VGYTSEAGVQAAFFGPSRHPTHPSGFSSGDHV 88
+GY + A V A F P+ HP HP SSG HV
Sbjct: 98 LGYPASASV-ACF--PTVHPDHPIFKSSGSHV 126
>At5g14310.1 68418.m01673 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 446
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGDA---DLHGPEYLVSRNIIVITFNYRL 567
LP+++ HGGG+ GS D+ D ++IV+ YRL
Sbjct: 151 LPVMLQFHGGGWVSGSSDSAANDFFCRRIAKVCDVIVLAVGYRL 194
>At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1017
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -3
Query: 649 ISAGSPCLAGRCCLVYWSN*VTGNRIHLTCN*RLLR*CSC*RDIRVRGDLHPRIRKSTLH 470
+S G P A +YW+ V G + L+ LL+ C+ RDIR +LH + K H
Sbjct: 121 VSNGEPASA---LALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH 177
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 262 EEGPACPQTDVLYGRIMKPKGF 327
EEGP CP+T+ L R P+GF
Sbjct: 22 EEGPVCPKTETL-SRASFPEGF 42
>At2g45600.1 68415.m05670 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 329
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 445 LPILVFIHGGGY-SFGSGDADLH-GPEYLVSR-NIIVITFNYRL 567
LPILV+ HGGG+ + + A H + R I+++ YRL
Sbjct: 66 LPILVYFHGGGFILYSAASAPFHESCTKMADRLQTIILSVEYRL 109
>At1g49660.1 68414.m05569 expressed protein
Length = 319
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGDADLHG---PEYLVSRNIIVITFNYR 564
LP+L++IHGG + S + L+ E + S N + ++ YR
Sbjct: 72 LPLLIYIHGGAWIIESPFSPLYHNYLTEVVKSANCLAVSVQYR 114
>At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 344
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGDADLHGP--EYLVSR-NIIVITFNYR 564
+P++VF HGG ++ S ++ ++ LV +V++ NYR
Sbjct: 104 VPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYR 146
>At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 358
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 445 LPILVFIHGGGYSFGSGDADLHGP---EYLVSRNIIVITFNYR 564
+P+L+F HGG ++ S ++ ++ + ++V++ +YR
Sbjct: 106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYR 148
>At1g04910.1 68414.m00488 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein' based on similarity to axi 1
protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 519
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 518 SGPWRSASPDPKEYPPPCMNTN 453
SG WR +S ++PPP TN
Sbjct: 68 SGGWRPSSAPRSDWPPPTKETN 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,918,382
Number of Sequences: 28952
Number of extensions: 343959
Number of successful extensions: 997
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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