Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B06
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    28   0.73 
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    26   3.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   3.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   5.2  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   9.0  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    24   9.0  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    24   9.0  

>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 253 CYKVFDQGYQWPLVVCVLLHC 191
           CY  FD  Y +   + VLLHC
Sbjct: 585 CYSFFDYNYTFSSALVVLLHC 605


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 154 RCGVNNGHLDSDYNVVGHRQLMATDSPGRKLYNIIRRW 267
           + GV   +LD D  ++ H+Q   T    R   + +  W
Sbjct: 168 KLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSW 205


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 395 NILWHIKFCITINIHHPSSIHHLQIE**PYYS 300
           NI    K+CI  N+  PS++ H + E   YYS
Sbjct: 440 NICTFAKWCINNNLDEPSNLKHFR-EMLDYYS 470


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 377 KFCITINIHHPSSIHHLQI 321
           +FCI+ ++ HP+ IH L +
Sbjct: 405 EFCISSSLRHPNVIHTLDL 423


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 112 QPTAEQIDALKSLLRCGVNNGHLDSDYNVVGHR 210
           QP     +   S +RC   N   D+ Y+ +GH+
Sbjct: 333 QPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHK 365


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 312 TILLFIAVNIFEPFGPPSD 256
           +I+   AVN+F P  PPS+
Sbjct: 173 SIVHMFAVNVFRPLPPPSN 191


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +1

Query: 25  SGWVHVSVPTHAYNRKALRITVIGNYNSHQPTAEQIDALKSLLRCGVNNGHLDSDY 192
           SGW + +  T+AY       T I +++    TA+    ++ ++  G   G  D  +
Sbjct: 519 SGWSNTNYDTYAYWHATNGQTGIASFSMGSLTADTYVPVRFVVANGAGKGGFDFSF 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,128
Number of Sequences: 5004
Number of extensions: 36166
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)