Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B06
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.9  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 181 DSDYNVVGHRQLMATDSPGRKLYNIIRRWP 270
           DSDY    + + +   S  RKL NI+   P
Sbjct: 201 DSDYTDKSNEKKIPKSSGWRKLRNIVHWTP 230


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 324 NRIVTILLFIAVNIF 280
           +RIV  L F+A+N+F
Sbjct: 427 SRIVFPLFFLAINVF 441


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 37  HVSVPTHAYNRKALRITVIGNYNSHQPTAEQIDALK 144
           H+++      + A+RI +   Y+SH    E  + LK
Sbjct: 503 HITINADKPMKAAIRIFIGPKYDSHHKLIEIPEDLK 538


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 37  HVSVPTHAYNRKALRITVIGNYNSHQPTAEQIDALK 144
           H+++      + A+RI +   Y+SH    E  + LK
Sbjct: 503 HITINADKPMKAAIRIFIGPKYDSHHKLIEIPEDLK 538


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 60  RVSGHANVHPTGSFIYF 10
           + +GH  +HP  SF ++
Sbjct: 74  KAAGHWVIHPCSSFRFY 90


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 60  RVSGHANVHPTGSFIYF 10
           + +GH  +HP  SF ++
Sbjct: 74  KAAGHWVIHPCSSFRFY 90


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 60  RVSGHANVHPTGSFIYF 10
           + +GH  +HP  SF ++
Sbjct: 74  KAAGHWVIHPCSSFRFY 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,726
Number of Sequences: 438
Number of extensions: 2875
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)