Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B02
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    34   0.088
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    34   0.088
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    31   0.82 
U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical ...    28   5.8  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 19/31 (61%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 440 CP-VTPEFNPVCGSDYQTYSNPGRLTCAQAC 529
           CP  T EF  VCGSD +TYSN  RL  A AC
Sbjct: 465 CPSCTDEFKEVCGSDGKTYSNECRLQNA-AC 494


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 19/31 (61%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 440 CP-VTPEFNPVCGSDYQTYSNPGRLTCAQAC 529
           CP  T EF  VCGSD +TYSN  RL  A AC
Sbjct: 473 CPSCTDEFKEVCGSDGKTYSNECRLQNA-AC 502


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 422 EECMRTCPVTPEFNPVCGSDYQTYSN 499
           E+C  T P   E+NPVC    QT++N
Sbjct: 117 EKCSCTAPCPTEWNPVCDKKGQTHAN 142



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +2

Query: 437 TCPVTPEFNPVCGSD--YQ-TYSNPGRLTCAQ 523
           TC   PE +PVC  +  YQ TYSN     CAQ
Sbjct: 24  TCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQ 55


>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 422 EECMRTCPVTPEFNPVCGSDYQ-TYSNPGRLTCAQACGVHVSLS 550
           E C   C     FNPVC  D + T+ +P    CA   G+    S
Sbjct: 443 ETCSENCHCDSFFNPVCSEDSKLTFLSPCHAGCADMPGIKFGAS 486


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 422 EECMRTCPVTPEFNPVCGSDYQTYSN 499
           E C   C  T + +P+C SD+ TY N
Sbjct: 584 EACQMPC--TDDKHPICASDFSTYEN 607



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 440 CPVTPEFNPVCGSDYQTYSNPGRLTCAQ 523
           C       PVCG+D  TY+N   L C Q
Sbjct: 19  CDCPSVIRPVCGTDNVTYNNLCFLRCVQ 46


>Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical
           protein C35C5.11 protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 3   TSLYRATKIDHIHFLNYYNLKWISCAQFLFWV 98
           T L   T I HIHF ++  +  I C   + WV
Sbjct: 478 TFLPHKTIIPHIHFTSFQQVAVIICLSLIIWV 509


>AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical
           protein Y51A2A.6 protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 434 RTCPVTPEFNPVCGSDYQTYSNPGRLTCAQA 526
           R  P  P   PVC SD+ T+  P    C +A
Sbjct: 64  RPRPTRPPRAPVCPSDWMTFDRPQGKWCVKA 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,522,479
Number of Sequences: 27780
Number of extensions: 238070
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)