Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B02
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77400.1 68414.m09013 expressed protein                             29   2.3  
At1g51570.1 68414.m05804 C2 domain-containing protein contains I...    27   9.4  

>At1g77400.1 68414.m09013 expressed protein
          Length = 232

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 152 NSPEELEDRYALNRPNNVRPDRFP 223
           +SP    +R+ L+RPN +RP+  P
Sbjct: 117 SSPRAFSERWQLHRPNRIRPESEP 140


>At1g51570.1 68414.m05804 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 776

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = -1

Query: 147 TCLLFLIFMHVA*LAIKPRIRIVHSLSILNCNNLKNECDQFL 22
           TC   L  M++  + + P++  +H L++   +NL+++  Q +
Sbjct: 497 TCSSLLNMMYMYSMPLLPKMHYLHPLTVSQLDNLRHQATQIV 538


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,832,875
Number of Sequences: 28952
Number of extensions: 220482
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)