Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B01
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   3.7  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   3.7  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   5.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   6.5  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    25   6.5  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   8.7  

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 469 SPLSNRHRQASCFSIPLGREQNGGHDVCEQHPVVTL 576
           S L N + ++  F+  L   +N   D+ EQHP VTL
Sbjct: 116 SILVNNYSRSQLFNHSLNESKN--RDLTEQHPFVTL 149


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 446 PVVRGSVYLYINFYCVRPSRYGSRQG 369
           P+V G  Y   N  C  PS+YG   G
Sbjct: 811 PIVNGVSYQNCNGACYNPSQYGCDNG 836


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 305 SEDLHLIILLHPSASHTVDDGVPAWIHI 388
           + +LHL I+ +P    TV   +P W+ I
Sbjct: 347 ASNLHLRIVFYPGIKGTVGFPLPIWVEI 374


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 89  RLLINKLAVITRMLINFKRDWSK*NIIIYSYSFTNDFHSRYNFQF 223
           +LL+N++  + ++ +NF  D    N++I  +     + S Y+  F
Sbjct: 650 KLLLNEMGKLFQVELNFSYDSPDVNLLIEQFYEITSYESNYDDAF 694


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 260 TILDIELLSNNHKF*SEDLHLIILLHPSASHTVDDGVPA-WIH 385
           T LD     +  KF  +  H    LHP   H  D  +PA WIH
Sbjct: 56  TALDNLNFIHKQKFEHQFRHGYWKLHPHPHHQHDSIIPASWIH 98


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 496 ASCFSIPLGREQNGGHDV 549
           A CF +PL RE+ GG  +
Sbjct: 59  AECFDLPLYREKIGGQSI 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,826
Number of Sequences: 5004
Number of extensions: 47052
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)