Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B01
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0491 - 9857895-9858584,9858689-9859270                           30   1.6  
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522...    28   5.0  
08_01_0296 + 2383578-2384220,2384754-2384829,2384942-2385057,238...    28   6.7  
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972...    27   8.8  

>09_02_0491 - 9857895-9858584,9858689-9859270
          Length = 423

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 608 VKAYDGSVLIISVTTGCCSHTSCPPFCS 525
           V AYDG V  +S+  G  +H  C   CS
Sbjct: 58  VAAYDGQVRAVSILLGLDNHRKCAGLCS 85


>01_03_0175 +
           13450869-13451013,13451293-13451372,13451417-13452240,
           13452287-13452638
          Length = 466

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 581 IISVTTGCCSHTSCPPFCSRPSGIE 507
           ++  +TGCCS   CPP     S ++
Sbjct: 152 MVHTSTGCCSAERCPPLSIATSSVD 176


>08_01_0296 +
           2383578-2384220,2384754-2384829,2384942-2385057,
           2385957-2386522
          Length = 466

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 570 NNWMLLTHVVPPVLFPTEWN*KTARLTMTVTQRTMPPSLILSCGS 436
           + W +++   P V+ P  +  K   LTMT  +R +P S  L  GS
Sbjct: 236 SGWKVISRAKPIVVDPGLYLSKKFDLTMTTERRELPTSFKLYTGS 280


>09_02_0475 +
           9724676-9724936,9725518-9726216,9726273-9726596,
           9726900-9727847
          Length = 743

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 189 RMISIRGIIFNFKMIFKYD*IQHLQYWI*NFFRITTSSNQRICI 320
           R++ + G +F  ++      ++HL+Y   +FFRIT   N+  C+
Sbjct: 528 RLLDLSGCLFQ-ELPTSIGELKHLRYLNVSFFRITELPNEMCCL 570


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,533,190
Number of Sequences: 37544
Number of extensions: 283939
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)