Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B01
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25758| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-20)                 29   2.9  
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)               28   5.1  
SB_49885| Best HMM Match : Phi-29_GP4 (HMM E-Value=3.4)                27   9.0  

>SB_25758| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-20)
          Length = 437

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 469 SPLSNRHRQASCFSIPLGREQNGGHDVCEQHPV 567
           SP  NRH +A+  S+   R +     +C+ HP+
Sbjct: 397 SPDDNRHSRATLLSVDDDRHRRSAAVICQSHPL 429


>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
          Length = 385

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -1

Query: 481 YSADYAAIFNIILWFGVVFTFTLISIVYALV---DMDPGRDSII-----YRMTSTRMKKD 326
           Y+  Y+AIFNI LW  VV   ++  I   L    D+ P   S +     +R  S  + KD
Sbjct: 288 YTPMYSAIFNIWLWLIVVIVLSVYVISLVLCGDSDICPEDSSRVMAEFKWRNMSVSLNKD 347

Query: 325 N*MQ 314
           N M+
Sbjct: 348 NAMR 351


>SB_49885| Best HMM Match : Phi-29_GP4 (HMM E-Value=3.4)
          Length = 307

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 547 RRAPRSVPDRVELKNSSPDDDGYSADYAAIFN 452
           RR   + PDR  L NS+P+     ++Y A+F+
Sbjct: 215 RRMALTFPDRRRLMNSNPNIRDIQSEYPALFD 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,309,295
Number of Sequences: 59808
Number of extensions: 342690
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)