Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B01
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 469 YAAIFNIILWFGVVFTFTLISI 404
           +AAI   + +F V+FT+ +I I
Sbjct: 404 FAAIIEWLSFFIVIFTYIIILI 425


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 550 TRRAPRSVPDRVEL 509
           T  +P SVPD VEL
Sbjct: 608 TELSPLSVPDSVEL 621


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 11  FFFMIPTNYLIHYITLTLFTKLQHYTRLLINKLAVITRMLIN 136
           FF +I        + L L  K   +T +L+    VIT +++N
Sbjct: 280 FFLLISEIIPSTSLALPLLGKYLLFTMILVGLSVVITIVILN 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,404
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)