BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I09A02NGRL0002_B01 (610 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g50280.1 68414.m05637 phototropic-responsive NPH3 family prot... 28 5.6 At5g55480.1 68418.m06910 glycerophosphoryl diester phosphodieste... 27 9.7 At1g15710.1 68414.m01885 prephenate dehydrogenase family protein... 27 9.7 >At1g50280.1 68414.m05637 phototropic-responsive NPH3 family protein contains NPH3 family domain, Pfam:PF03000 Length = 525 Score = 27.9 bits (59), Expect = 5.6 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +2 Query: 20 MIPTNYLIHYITLTLFTKLQHYTRLLINKL 109 ++ T +L+HY+ L TK + T L+ NKL Sbjct: 231 LVLTRFLLHYLKTKLQTKSRTTTELMRNKL 260 >At5g55480.1 68418.m06910 glycerophosphoryl diester phosphodiesterase family protein contains Pfam PF03009 : Glycerophosphoryl diester phosphodiesterase family; similar to Glycerophosphoryl diester phosphodiesterase precursor (Glycerophosphodiester phosphodiesterase) (Surface-exposed lipoprotein D) (Protein D) (ImmunoglobulinD-binding protein) (IGD-binding protein) (SP:Q06282) {Haemophilus influenzae} Length = 766 Score = 27.1 bits (57), Expect = 9.7 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +2 Query: 134 NFKRDWSK*NIIIYSYSFTNDFHSRYNFQF 223 +F +D K + +Y+ F NDF YN+ F Sbjct: 288 SFVQDAHKAGLEVYASGFGNDFDLAYNYSF 317 >At1g15710.1 68414.m01885 prephenate dehydrogenase family protein contains Pfam profile: PF02153 prephenate dehydrogenase Length = 358 Score = 27.1 bits (57), Expect = 9.7 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 541 HDVCEQHPVVTLIIST 588 HD+CEQHP V L+ ++ Sbjct: 108 HDLCEQHPDVVLLCTS 123 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,011,428 Number of Sequences: 28952 Number of extensions: 237314 Number of successful extensions: 394 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 390 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 394 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1216725696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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