Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B01
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50280.1 68414.m05637 phototropic-responsive NPH3 family prot...    28   5.6  
At5g55480.1 68418.m06910 glycerophosphoryl diester phosphodieste...    27   9.7  
At1g15710.1 68414.m01885 prephenate dehydrogenase family protein...    27   9.7  

>At1g50280.1 68414.m05637 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 525

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 20  MIPTNYLIHYITLTLFTKLQHYTRLLINKL 109
           ++ T +L+HY+   L TK +  T L+ NKL
Sbjct: 231 LVLTRFLLHYLKTKLQTKSRTTTELMRNKL 260


>At5g55480.1 68418.m06910 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to Glycerophosphoryl diester phosphodiesterase
           precursor  (Glycerophosphodiester phosphodiesterase)
           (Surface-exposed lipoprotein D) (Protein D)
           (ImmunoglobulinD-binding protein) (IGD-binding protein)
           (SP:Q06282) {Haemophilus influenzae}
          Length = 766

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 134 NFKRDWSK*NIIIYSYSFTNDFHSRYNFQF 223
           +F +D  K  + +Y+  F NDF   YN+ F
Sbjct: 288 SFVQDAHKAGLEVYASGFGNDFDLAYNYSF 317


>At1g15710.1 68414.m01885 prephenate dehydrogenase family protein
           contains Pfam profile: PF02153 prephenate dehydrogenase
          Length = 358

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 541 HDVCEQHPVVTLIIST 588
           HD+CEQHP V L+ ++
Sbjct: 108 HDLCEQHPDVVLLCTS 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,011,428
Number of Sequences: 28952
Number of extensions: 237314
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)