Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A22
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    51   1e-07
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   3.6  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 52/210 (24%), Positives = 83/210 (39%), Gaps = 19/210 (9%)
 Frame = +3

Query: 6   QPPILIEHYTAEVDATQEGPACPQPVYDN---------YPVDEDCXQTQLFTXHXTXXQK 158
           +P  L + Y    D  Q    CPQP Y+N         +  DEDC    LF        +
Sbjct: 38  RPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKYDEDC----LFLNIWVPAGE 93

Query: 159 LXVR*NSVXMHPXGGFYSVSGR---SDVSGPEYQLDRD---VVIVTINYRLASLGFLSTG 320
                  V     GG+  V            + Q D      ++V+  +RL   GFL+  
Sbjct: 94  KPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFILVSPGHRLNLFGFLAGK 153

Query: 321 DKYAP----GNNGFKDQVMALRWVQRNIAAFGADKDLVTIAGYSAGSFSVLLHMVSPMSK 488
           +         N GF DQ + L W  ++I +FG +K+ + + G SAGS+S L  ++     
Sbjct: 154 ELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGGISAGSYSALFQLIYE--- 210

Query: 489 GLFHRAMTPDSRQYLRIGNEFSIHERLFED 578
             +H       ++ L + N  S+  +  E+
Sbjct: 211 -TYHPEANQIIKRALLLSNGLSVQPKSVEE 239


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -2

Query: 317 GA*ETKRSKSVVDGDDDNISVELVLRTGDIAAPRHGVESSXGV 189
           G+ ET + K  VD   +NI  EL   TGDI  P    + S G+
Sbjct: 187 GSRETLKKKPFVD---ENIPAELHTTTGDILKPITPEQLSQGI 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,156
Number of Sequences: 5004
Number of extensions: 43964
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)