Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A22
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 30 1.2
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 30 1.6
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 29 2.8
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 29 3.7
10_01_0316 + 3479574-3482679,3482766-3483127 28 6.5
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 28 6.5
04_04_0235 + 23819060-23819114,23819486-23819542,23819707-238198... 28 6.5
10_06_0112 + 10899079-10900656,10900761-10900920,10900948-109010... 27 8.5
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896... 27 8.5
07_01_0065 + 466416-467465 27 8.5
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 27 8.5
05_01_0247 - 1844275-1844514,1847822-1848140,1848219-1848348,184... 27 8.5
01_01_0092 + 722744-723459,723542-723711,723792-724885 27 8.5
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +3
Query: 255 DRDVVIVTINYRLASLGFLSTGDKYAPGNNGFKDQVMALRWVQRNIAAFGADKDLVTIAG 434
+R +++ I+YR G + GD + + G + +V NIA++G D + + + G
Sbjct: 172 ERGIIVACIDYRNFPQGTI--GDMVSDASQG-------ISYVCNNIASYGGDPNRIYLVG 222
Query: 435 YSAGS 449
SAG+
Sbjct: 223 QSAGA 227
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +3
Query: 240 PEYQLDRDVVIVTINYRLASLGFLSTGDKYA---PGNNGFKDQVM---ALRWVQRNIAAF 401
P+ +L +D+ I T YR + + LS+GD + P + D + ++R + + A
Sbjct: 2572 PQNKLGQDIYIRTTEYRSSDVTLLSSGDDRSIKVPASRDLLDSHLKGRSVRLYRLMVTAI 2631
Query: 402 GADKDLVTIAGYSAGSFSVLLHMVS 476
A+ ++ G + G + V L + S
Sbjct: 2632 IANAEIKVGEGLATGEYMVALRIYS 2656
>05_01_0166 +
1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 281 DGDDDNISVELVLRTGDIAAPRHGVESS 198
D DDDNI+ E LR+ PRHG++SS
Sbjct: 614 DSDDDNINQEDNLRSE--VTPRHGLKSS 639
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +3
Query: 255 DRDVVIVTINYRLASLGFLSTGDKYAPGNNGFKDQVMALRWVQRNIAAFGADKDLVTIAG 434
+R +++ I+YR G + GD + G + +V NIA++G D + + + G
Sbjct: 180 ERGILVACIDYRNFPQGTI--GDMVEDASQG-------IAFVCNNIASYGGDPERIYLVG 230
Query: 435 YSAGS 449
SAG+
Sbjct: 231 QSAGA 235
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/71 (22%), Positives = 32/71 (45%)
Frame = -2
Query: 287 VVDGDDDNISVELVLRTGDIAAPRHGVESSXGVHVXTISPDX*FLSXCXVRCKQLSLXAV 108
++D DD + +V +V+ T AP HG + S L + C+++ +
Sbjct: 1013 IIDDDDADATVSVVVGTLGYIAPEHGYSTRLSEKSDVYSYGVVLLE---LLCRKMPVDPA 1069
Query: 107 FINRIVVVDWL 75
F + + +V W+
Sbjct: 1070 FGDGVDIVTWM 1080
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 308 ETKRSKSVVDGDDDNISVELVLRTGDIAAPRHGVESSXGVHVXTISPDX*FL 153
ET+++ ++ D D V L T A+ E+ G H+ SPD F+
Sbjct: 522 ETEKNSALTDSPDKMYMVTLENSTSPTASLNENKENEKGCHMIKDSPDVVFV 573
>04_04_0235 +
23819060-23819114,23819486-23819542,23819707-23819808,
23820162-23820238,23820347-23820470,23820730-23820794,
23821827-23821896,23822395-23822470,23822597-23822687,
23822767-23822889
Length = 279
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 434 ARDSDQVLVCAERSDVPLHPAE 369
A + + CAE S VP HPAE
Sbjct: 218 ANKTSEASFCAENSPVPFHPAE 239
>10_06_0112 +
10899079-10900656,10900761-10900920,10900948-10901028,
10901264-10901517
Length = 690
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 465 AATH*-RSQRCSPR**PGPCLRRTQ-RCSSAPSGEPSPD 355
AA H ++RC+ G C +T RC++ SG P PD
Sbjct: 134 AAVHLVEAERCTSAFDIGSCTTKTALRCAAGASGHPDPD 172
>09_04_0300 -
16488358-16488447,16488684-16489116,16489377-16489642,
16490015-16490044,16490282-16490606,16491752-16492035,
16492154-16492376,16493117-16493173,16494454-16494947
Length = 733
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +3
Query: 270 IVTINYRLASLGFLSTGDKYAPGNNGFKDQVMALRWVQRNIAAFGADKDLVTIAGYSAGS 449
I I +RL L + D N + W + + +G K + Y+AGS
Sbjct: 455 IEQIEFRLVQLFHIYLQDAVKGNNIAHSNTSCRDIWTEYHELGWGGIKAVADYKVYTAGS 514
Query: 450 FSVLLHMVSP--MSKGLFH 500
LL V+P M +G H
Sbjct: 515 IIDLLRFVAPRMMQRGSVH 533
>07_01_0065 + 466416-467465
Length = 349
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 420 PGPCLRRTQRCSSAPSGEPSP 358
P RR +RC +APS EP P
Sbjct: 20 PEGAARRFRRCRTAPSSEPPP 40
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 430 RATALAPSVCCCTWYRPCPK 489
RAT +A S+CCC Y PK
Sbjct: 181 RATVIALSLCCCHCYVNLPK 200
>05_01_0247 -
1844275-1844514,1847822-1848140,1848219-1848348,
1848706-1848883
Length = 288
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -3
Query: 586 LKRSSKSLSCIENSFPMRRYWRESGVMARWKRPLDMGDTMCSNTLKEPAL*PAIVTRSLS 407
+++ +K L C NS R R + +R D + + PA A TRS+S
Sbjct: 127 VQKHAKQLRCDVNSKEFRDVVRHVWMPRLIERI--QADAAAAGEVAAPAPVSAAATRSMS 184
Query: 406 APNAAMFLCTQR 371
+P AM+L Q+
Sbjct: 185 SPAGAMYLHHQQ 196
>01_01_0092 + 722744-723459,723542-723711,723792-724885
Length = 659
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 42 VDATQEGPACPQPVYDNYPVDEDCXQTQLFT 134
VDA + +CP P+++N P D T+L+T
Sbjct: 102 VDANLDNSSCPLPLWNNLPYFNDMG-TKLYT 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,865
Number of Sequences: 37544
Number of extensions: 359134
Number of successful extensions: 1079
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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