Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A22
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15860.2 68418.m01856 expressed protein                             32   0.25 
At5g15860.1 68418.m01855 expressed protein                             32   0.25 
At3g02410.1 68416.m00228 hypothetical protein weak similarity to...    32   0.33 
At1g26120.1 68414.m03188 esterase-related contains similaity to ...    32   0.33 
At5g02940.1 68418.m00237 expressed protein                             31   0.58 
At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar...    30   1.0  
At1g77510.1 68414.m09026 protein disulfide isomerase, putative s...    28   4.1  
At3g57700.1 68416.m06428 protein kinase, putative contains prote...    27   7.1  
At2g33070.1 68415.m04055 jacalin lectin family protein similar t...    27   7.1  
At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein ...    27   9.4  
At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue...    27   9.4  
At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue...    27   9.4  

>At5g15860.2 68418.m01856 expressed protein
          Length = 299

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 21/80 (26%), Positives = 39/80 (48%)
 Frame = +3

Query: 255 DRDVVIVTINYRLASLGFLSTGDKYAPGNNGFKDQVMALRWVQRNIAAFGADKDLVTIAG 434
           +RD+++  ++YR    G +S  D     + G       + +V  NI+AFG D + + + G
Sbjct: 183 ERDIIVACLDYRNFPQGTIS--DMVTDASQG-------ISFVCNNISAFGGDPNRIYLMG 233

Query: 435 YSAGSFSVLLHMVSPMSKGL 494
            SAG+      ++   +K L
Sbjct: 234 QSAGAHIAACALLEQATKEL 253


>At5g15860.1 68418.m01855 expressed protein
          Length = 427

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 21/80 (26%), Positives = 39/80 (48%)
 Frame = +3

Query: 255 DRDVVIVTINYRLASLGFLSTGDKYAPGNNGFKDQVMALRWVQRNIAAFGADKDLVTIAG 434
           +RD+++  ++YR    G +S  D     + G       + +V  NI+AFG D + + + G
Sbjct: 183 ERDIIVACLDYRNFPQGTIS--DMVTDASQG-------ISFVCNNISAFGGDPNRIYLMG 233

Query: 435 YSAGSFSVLLHMVSPMSKGL 494
            SAG+      ++   +K L
Sbjct: 234 QSAGAHIAACALLEQATKEL 253


>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
           kynurenine formamidase [Mus musculus] GI:21552719
          Length = 422

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 255 DRDVVIVTINYRLASLGFLSTGDKYAPGNNGFKDQVMALRWVQRNIAAFGADKDLVTIAG 434
           +RD+++  ++YR    G +S         +   D    + +V  NI+AFG D + + + G
Sbjct: 178 ERDIIVACLDYRNFPQGTIS---------DMVSDAAQGISFVCNNISAFGGDPNRIYLMG 228

Query: 435 YSAGS 449
            SAG+
Sbjct: 229 QSAGA 233


>At1g26120.1 68414.m03188 esterase-related contains similaity to
           esterase 6 GI:606998 from [Drosophila simulans] and
           esterase GI:12584120 from [Sphingomonas elodea]
          Length = 476

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = +3

Query: 255 DRDVVIVTINYRLASLGFLSTGDKYAPGNNGFKDQVMALRWVQRNIAAFGADKDLVTIAG 434
           +RD+++  I+YR    G +S         +  KD    + +V  +IA +G D D + + G
Sbjct: 234 ERDIIVACIDYRNFPQGSIS---------DMVKDASSGISFVCNHIAEYGGDPDRIYLMG 284

Query: 435 YSAGSFSVLLHMVSPMSK 488
            SAG+      +V  + K
Sbjct: 285 QSAGAHIAACTIVEQVIK 302


>At5g02940.1 68418.m00237 expressed protein 
          Length = 813

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -2

Query: 575 LEKPLMY*EFVSYAEVLAGVXGHGAVEETFGHG-RYHVQQHTEGASAVARDSDQVLVCAE 399
           LE+   +   + +   + G+  +  +  T     RYH+++  EGA     +SD +++C  
Sbjct: 207 LEQKTRFERLIGFVLAIWGIVFYSRLLSTMTEQFRYHMKKVREGAHMQVLESDHIIICGI 266

Query: 398 RSDVP 384
            S +P
Sbjct: 267 NSHLP 271


>At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar to
           Acylamino-acid-releasing enzyme (EC 3.4.19.1)
           (Acyl-peptide hydrolase) (APH) (Acylaminoacyl-peptidase)
           (Swiss-Prot:P13676) [Rattus norvegicus]; annotated with
           nonconsensus TT and CT acceptor splice sites.
          Length = 764

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 29/92 (31%), Positives = 39/92 (42%)
 Frame = +3

Query: 198 GGFYSVSGRSDVSGPEYQLDRDVVIVTINYRLASLGFLSTGDKYAPGNNGFKDQVMALRW 377
           GG +SVS  S      Y        + INYR  SLG+     +  PG  G +D    L  
Sbjct: 539 GGPHSVSPCSFSRTMAYLSSIGYSQLIINYR-GSLGYGEDALQSLPGKVGSQDVKDCLLA 597

Query: 378 VQRNIAAFGADKDLVTIAGYSAGSFSVLLHMV 473
           V   I    AD   +T+ G S G F +  H++
Sbjct: 598 VDHAIEMGIADPSRITVLGGSHGGF-LTTHLI 628


>At1g77510.1 68414.m09026 protein disulfide isomerase, putative
           similar to protein disulfide isomerase precursor
           GB:P29828 GI:4704766 [Medicago sativa]; Pfam HMM hit:
           PF00085 Thioredoxins
          Length = 508

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +3

Query: 366 ALRWVQRNIAAFGADKDLVTIAGYSAGSFSVLLHMVSPMSKGLFHRAMTPDSRQYLRIGN 545
           AL+   R +A    D+ L  + G +  S     +     S+       TPD+++YL++  
Sbjct: 281 ALKSKYREVATSNKDQSLAFLVGDAESSQGAFQYFGLEESQVPLIIIQTPDNKKYLKVNV 340

Query: 546 EFSIHERLFED 578
           E    E  F+D
Sbjct: 341 EVDQIESWFKD 351


>At3g57700.1 68416.m06428 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 340

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 453 SVLLHMVSPMSKGLFHRAMTPDSRQYLRIGNEFSIHERLFEDRFKVW 593
           S+LL  +   S G+++   T  S Q L+  N F  +  + EDRF VW
Sbjct: 24  SLLLEELIATSGGIYNPIRTFSSDQILQATNHFDWNYVISEDRF-VW 69


>At2g33070.1 68415.m04055 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767, epithiospecifier [Arabidopsis
           thaliana] GI:16118845; contains Pfam profiles PF01419
           jacalin-like lectin family, PF01344 Kelch motif
          Length = 471

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 406 QTRTWSLSRATALAPSVCC 462
           +TRTWS+S AT   P++ C
Sbjct: 202 ETRTWSISPATGDVPNLSC 220


>At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 402

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 577 SSKSLSCIENSFPMRRYWRESGVMARWKRPLDMGDTMCSNTLKEPA 440
           SS  L C+ N  P +    ESGV++  +R ++ G +    T KEPA
Sbjct: 178 SSYDLGCLLNKKPRKGGELESGVLSNEQRLMEEGFS-SYGTSKEPA 222


>At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue
           light photoreceptor (PHH1) 97% identical  to photolysase
           (PHH1)  (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
           (SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
           gene; contains Pfam profiles PF03441: FAD binding domain
           of DNA photolyase and PF00875: deoxyribodipyrimidine
           photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
           GI:18026275
          Length = 612

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 484 DMGDTMCSNTLKEPAL*PAIVTRSLSAPNAAMFLCTQR 371
           D  + + +NT+KEP L P++ +     P+A  +  ++R
Sbjct: 505 DSFEALGANTIKEPGLCPSVSSNDQQVPSAVRYNGSKR 542


>At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue
           light photoreceptor (PHH1) 97% identical  to photolysase
           (PHH1)  (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
           (SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
           gene; contains Pfam profiles PF03441: FAD binding domain
           of DNA photolyase and PF00875: deoxyribodipyrimidine
           photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
           GI:18026275
          Length = 612

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 484 DMGDTMCSNTLKEPAL*PAIVTRSLSAPNAAMFLCTQR 371
           D  + + +NT+KEP L P++ +     P+A  +  ++R
Sbjct: 505 DSFEALGANTIKEPGLCPSVSSNDQQVPSAVRYNGSKR 542


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,498,997
Number of Sequences: 28952
Number of extensions: 261106
Number of successful extensions: 724
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)