Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A21
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    28   0.96 
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   2.2  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    26   2.9  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   2.9  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    26   3.9  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   9.0  

>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 249 LATGLYQCRFPPLNPTHQFEAVIMFNVLYSAKDYDTFYKTTVYMKDRVNQDL 404
           + T LYQ  F  LN         +FN    AKD D F++      D + Q L
Sbjct: 451 IVTTLYQKDFAKLNRAMNLPTKNLFNACIGAKD-DLFFRYLSLFSDDIPQKL 501


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 121 WKYNKEISICFFANST 74
           WKYN ++  C+  NST
Sbjct: 116 WKYNPDLDYCYLDNST 131


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 82  NSTESSVLTGSHNPGAKMSANTNKLK 5
           N  +SS L   H+P + M +NT KL+
Sbjct: 88  NDLDSSKLRRPHHPNSIMGSNTGKLR 113


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 57  VRTDDSVEFAKKQIDISLLYF 119
           ++ D +V+ +KKQI  SLLYF
Sbjct: 262 IKKDSNVKCSKKQILFSLLYF 282


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 77  RVREKADRYFLIILPCSRTKSRFEIYNYF 163
           ++R+ A +   II+P S +K++ E+ +YF
Sbjct: 110 KLRDSASQIMDIIIPDSLSKAKVELLDYF 138


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 106 PYYTSMLANQITFRNL*LFPLAGVLRI 186
           P YTSML N  +F+      LAG++ +
Sbjct: 305 PIYTSMLYNYSSFQAGNFLSLAGIINV 331


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +2

Query: 92  ADRYFLIILPCSRTKSRFEIYNYFR 166
           A++Y + + PC+ T  +FE++  ++
Sbjct: 94  AEKYSVTMEPCTYTDEKFEVFKKYQ 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,887
Number of Sequences: 5004
Number of extensions: 44289
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)