Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A21
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1390 + 26217623-26218370,26218435-26218934                       31   0.55 
06_03_0568 + 22351552-22351679,22352176-22352227,22353044-223531...    31   0.73 
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977...    28   5.2  
06_01_0851 - 6477629-6478810                                           27   9.0  

>07_03_1390 + 26217623-26218370,26218435-26218934
          Length = 415

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 48  CDPVRTDDSVEFAKKQIDISLLYFHA--REPNHVSKSITISASWSIEN 185
           C PV  D  +   K+Q+ + LL +    ++P+  SKS++ +A W +EN
Sbjct: 303 CMPVHAD--IIILKEQMRMQLLEYKLLRKKPSQDSKSVSTNADWKLEN 348


>06_03_0568 +
           22351552-22351679,22352176-22352227,22353044-22353117,
           22353233-22353322,22353833-22353976,22354885-22354973,
           22355539-22355612,22357233-22357317,22357677-22357952,
           22358392-22358420
          Length = 346

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 199 FKNETAVKIWILMKKQNWLLAFISAVFLH 285
           + N TA+  W++ K+ NW+ +F   V L+
Sbjct: 53  YVNVTAISTWVIYKEVNWISSFFWVVLLY 81


>10_08_0422 -
           17796916-17797167,17797328-17797453,17797546-17797700,
           17797793-17797907,17798022-17798118,17798274-17798368,
           17798500-17798585,17798689-17798819,17798909-17799090
          Length = 412

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 124 AWKYNKEISICFFANSTESSVLTGSHNPGAKM 29
           +W  N++  +  F N T++ VL   HNP  K+
Sbjct: 142 SWTLNEDKFLKSFTNRTKAVVLNSPHNPTGKV 173


>06_01_0851 - 6477629-6478810
          Length = 393

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 225 MDLDEETKLATGLYQCRFPPLNPTHQFEAVIMFNVLYSAKDYDTFYK 365
           ++  + T+    LY CR   +NP    +AV     L  A+ + TF++
Sbjct: 197 INASDVTRTTLSLYSCRLFTVNPRFLQDAVARVEELGVARGWRTFHR 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,851,792
Number of Sequences: 37544
Number of extensions: 243477
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)