Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A21
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe...    27   8.0  
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe...    27   8.0  
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.     27   8.0  

>Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical
           protein ZK909.5 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 333 YSAKDYDTFYKTTVYMKDRVNQDLYIYV 416
           YS   Y   +K+ +Y K+R NQ+ YI V
Sbjct: 69  YSETQYWYTFKSDIYRKERTNQEGYIEV 96


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 175  LQLAEIVIDFET*FGSRA-WKYNKEISIC 92
            +Q  +I+ DFE  FGSR  WK   E  IC
Sbjct: 1296 VQKFQIISDFENYFGSRGLWKNYLEAMIC 1324


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 175  LQLAEIVIDFET*FGSRA-WKYNKEISIC 92
            +Q  +I+ DFE  FGSR  WK   E  IC
Sbjct: 1296 VQKFQIISDFENYFGSRGLWKNYLEAMIC 1324


>Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical
           protein F09A5.3 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 121 WKYNKEISICFFANSTESSVLTGSHNPGAKM-SANTNKL 8
           + + KE+ + F    T S+VL G H    +M   N N++
Sbjct: 65  YSFMKEVEVAFMEQDTISNVLRGGHGEWCEMFKDNANEM 103


>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
           defective protein 27,isoform b protein.
          Length = 1124

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 42  GLCDPVRTDDSVEFAKKQIDISLLYF 119
           G+  P+  DD  EF++K  DI   Y+
Sbjct: 30  GVSSPMENDDEPEFSQKHYDIEPCYY 55


>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying
           defective protein 27,isoform a protein.
          Length = 1129

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 42  GLCDPVRTDDSVEFAKKQIDISLLYF 119
           G+  P+  DD  EF++K  DI   Y+
Sbjct: 30  GVSSPMENDDEPEFSQKHYDIEPCYY 55


>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
          Length = 1129

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 42  GLCDPVRTDDSVEFAKKQIDISLLYF 119
           G+  P+  DD  EF++K  DI   Y+
Sbjct: 30  GVSSPMENDDEPEFSQKHYDIEPCYY 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,668,065
Number of Sequences: 27780
Number of extensions: 236777
Number of successful extensions: 525
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)