Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A20
(425 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein. 29 5.0
U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein. 29 5.0
U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein. 29 5.0
L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair prote... 29 5.0
L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair prote... 29 5.0
L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair prote... 29 5.0
L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein. 29 5.0
BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon c... 29 5.0
AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon c... 29 5.0
AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant ... 29 5.0
AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant ... 29 5.0
AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein. 29 5.0
>U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein.
Length = 887
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
>U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
>U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
>L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
>L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
>L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
>L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein.
Length = 810
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
>BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
>AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
>AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
>AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
>AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein.
Length = 586
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 394 FGHYFFNLPNALIFERKILKNRKNFETV*LVKIFFKYRN 278
FG+YF E K+L+N KNF TV + K K+ N
Sbjct: 519 FGYYF----RVTCKEEKVLRNNKNFSTVDIQKNGVKFTN 553
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,713,848
Number of Sequences: 237096
Number of extensions: 1131418
Number of successful extensions: 2936
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2936
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3316445452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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