Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A19
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    28   1.1  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    28   1.1  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   3.2  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.2  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.7  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   7.5  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   9.9  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   9.9  
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    25   9.9  

>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 197 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNA-GFKK 328
           +KI ASAT    DFI  N+      +N F S DTS++ N  GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 390 YLESENPKLGSQEDFMKGVSNFLKPALKSTEVSGLLKRF 274
           Y ESE+P + S  D    +S         TE S +++RF
Sbjct: 235 YQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 351 DFMKGVSNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 187
           DF K   N L           ++  FSF SRE S R +K + +A+   P L ++I
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSI 630


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 320 FKKFDTPFMKSSWEPNFGFSL 382
           F+K++T F+KS +  N G SL
Sbjct: 38  FEKYETSFLKSLFNGNLGLSL 58


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 236 FINRNDYSLDGKLNLFKSPDTSVD 307
           F   N Y   G  N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 164 TVGGGIDYMFKD-KIGASATAAHTDFIN 244
           +VG  I Y  +D K+    TA+H DF+N
Sbjct: 25  SVGRAIRYCKEDGKVEGCETASHVDFLN 52


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 165 VLKLGTLAISGIFLVAKAFAVMSWXSLWKRFTLPAAVTLS 46
           ++  G+L+I  IF+    F + SW +L+   T   A TLS
Sbjct: 401 IIVFGSLSI--IFIHIYCFKITSWVNLYGWITCTIARTLS 438


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 97  VVIVVEEIHFAGSCHLVSEPG 35
           +V +  +IHF+G+C+ V+  G
Sbjct: 397 IVSIPHQIHFSGTCYSVAAGG 417


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 224 AHTDFINRNDYSLDGKLNLFKSPDTSVDFNAGFKKFDTPFMKS 352
           +H +F + ND+S   KLN   S  +       +K+   PF K+
Sbjct: 158 SHDNFSDSNDFSFQKKLNTEDSNTSKTSTLDMYKEKLKPFTKT 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,991
Number of Sequences: 5004
Number of extensions: 40130
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)