Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A19
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28412-7|AAC46597.2|  201|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical p...    28   5.2  
Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical pr...    28   5.2  

>U28412-7|AAC46597.2|  201|Caenorhabditis elegans Hypothetical
           protein T19C3.6 protein.
          Length = 201

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 453 FALNDITKCIFRQCKCMK*C 512
           FA+ D  K IF +CK MK C
Sbjct: 60  FAMKDTMKSIFAECKAMKTC 79


>Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical
           protein ZK262.11 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 162 LKLGTLAISGIFLVA-KAFAVMSWXSLWKRFTLP 64
           L+  TL I+GIF    +     SW  LWK+F  P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


>Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical
           protein C43D7.6 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 162 LKLGTLAISGIFLVA-KAFAVMSWXSLWKRFTLP 64
           L+  TL I+GIF    +     SW  LWK+F  P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,219,973
Number of Sequences: 27780
Number of extensions: 225415
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)