Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A19
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19660.1 68418.m02339 subtilase family protein contains Pfam ...    28   3.6  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    28   3.6  
At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase fa...    27   8.4  

>At5g19660.1 68418.m02339 subtilase family protein contains Pfam
           profile: PF00082 subtilase family
          Length = 1038

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +2

Query: 167 VGGGIDYMFKDKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNAGFKKFDTPFM 346
           V GG +    + + AS   A  D I   D+S+DG+ + + S    V F AG      P +
Sbjct: 745 VTGGANIPALNNLLASFGIAFGDKILNGDFSIDGEQSRYASGTNIVRFPAGGFLHTFPLL 804

Query: 347 KSS 355
            SS
Sbjct: 805 DSS 807


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 4   PRSKSHGYTHPRVRRQGDSCRQSESLPQRXPRHHSEGF 117
           PR +SHG ++     +GD   +SE   +   RH+ + F
Sbjct: 255 PRGRSHGRSYREDSYEGDHWNESERRREYEDRHNQDHF 292


>At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P70704], {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1213

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 119 ATRNMPDIANVPNFNTVGGGIDYMFKDKIG 208
           A  N P  A   N N   G ++Y+F DK G
Sbjct: 387 AETNTPASARTSNLNEELGQVEYIFSDKTG 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,630,671
Number of Sequences: 28952
Number of extensions: 213677
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)