Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_A18
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0011 - 7337618-7338496,7338596-7338991 42 4e-04
01_06_0824 - 32243495-32244319,32244449-32244859 42 4e-04
11_02_0012 - 7346282-7347136,7347234-7347593 42 5e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 41 7e-04
04_04_0619 + 26652923-26653267,26653440-26654273 40 0.002
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 40 0.002
11_02_0014 - 7352619-7352918,7353173-7353418 38 0.007
01_01_1152 + 9170628-9171899 37 0.015
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 35 0.062
11_01_0767 + 6438648-6438809,6439146-6440000 34 0.082
11_01_0750 - 6315126-6315896,6316371-6316784 33 0.14
04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122 33 0.19
11_01_0771 + 6453130-6454488 30 1.8
04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911 28 7.1
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267 27 9.4
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 41.9 bits (94), Expect = 4e-04
Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 5/156 (3%)
Frame = +2
Query: 140 LDKSQNVVSSPLSAEYXXXXXXXXXXDPAHEELLTSLDIPN-DDCIRSSFTSITSNL--- 307
+ ++N+V SP S +ELL L + DD S ++ L
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADE 86
Query: 308 KSIQGITLNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFN-DGAASAAAINKWVE 484
+ G ++ A V+ E EL + A + A NF S INKWV
Sbjct: 87 SASGGPRVSDACGVWHDE-TLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVS 145
Query: 485 SKTNDRIKXXXXXXXXXXXXRVVLVNALYFKGMWKS 592
TN I +VLVNA+YFKG W +
Sbjct: 146 KATNKLIPEILPDGSVHVDTALVLVNAIYFKGKWSN 181
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +2
Query: 320 GITLNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFNDGAASAAA-INKWVESKTN 496
G + AN V++ + L + + A ++F D A IN+W ES T
Sbjct: 96 GPKVRFANGVWV-DAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFESATA 154
Query: 497 DRIKXXXXXXXXXXXXRVVLVNALYFKGMWKS 592
RIK VL NALYFKG W+S
Sbjct: 155 GRIKDFLPKDAVDRATPAVLGNALYFKGDWES 186
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 452 ASAAAINKWVESKTNDRIKXXXXXXXXXXXXRVVLVNALYFKGMWKS 592
+S INKWV TN I+ +VLVNA+YFKG W +
Sbjct: 123 SSRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSN 169
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +2
Query: 449 AASAAAINKWVESKTNDRIKXXXXXXXXXXXXRVVLVNALYFKGMW 586
A A+ +N WVE T+ IK R+VL NALYFKG W
Sbjct: 211 AEVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAW 256
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 467 INKWVESKTNDRIKXXXXXXXXXXXXRVVLVNALYFKGMW 586
+N WV+ T+ IK ++VL NALYFKG W
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAW 508
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 374 LHSELKEDAVKVFDASFEKLNF-NDGAASAAAINKWVESKTNDRIKXXXXXXXXXXXXRV 550
L E + A A ++F N A+AA +N+++ TN R+ +
Sbjct: 91 LRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNNTISPGTFGSSTKC 150
Query: 551 VLVNALYFKGMW 586
VL NA++FK W
Sbjct: 151 VLANAMHFKATW 162
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +2
Query: 449 AASAAAINKWVESKTNDRIKXXXXXXXXXXXXRVVLVNALYFKGMW 586
A A+ +N WV+ T+ IK R+VL NALYFKG W
Sbjct: 3 AEVASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAW 48
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 455 SAAAINKWVESKTNDRIKXXXXXXXXXXXXRVVLVNALYFKGMW 586
S IN+WV TN I +VLVNA+YFKG W
Sbjct: 86 SRKKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKW 129
>01_01_1152 + 9170628-9171899
Length = 423
Score = 36.7 bits (81), Expect = 0.015
Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 2/149 (1%)
Frame = +2
Query: 146 KSQNVVSSPLSAEYXXXXXXXXXXDPAHEELLTSLDIPN-DDCIRSSFTSITSNLKSIQG 322
+ +N + SPLS ELL L P+ + RS T + + L+ +
Sbjct: 57 QGRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPN 116
Query: 323 ITLNIANKVYLKEGPYELHSELKEDAVKVFDASFEKLNFNDGAASAAA-INKWVESKTND 499
+ A V++ G L E + A + A E +F A +N +V T
Sbjct: 117 TSF--ACGVWVDRGR-ALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEG 173
Query: 500 RIKXXXXXXXXXXXXRVVLVNALYFKGMW 586
I+ VVL NA++FKG W
Sbjct: 174 LIRDVLPPNSVDSSTVVVLANAVHFKGTW 202
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 34.7 bits (76), Expect = 0.062
Identities = 23/58 (39%), Positives = 29/58 (50%)
Frame = -1
Query: 444 SLKFNFSKEASNTLTASSFSSECSSYGPSFKYTLFAMFSVIPCIDFKLDVIEVNEERI 271
+L+F S ASNTL S CS YG FK LF +++ C I NEER+
Sbjct: 48 TLRF-LSPHASNTL-GSFLEDHCSRYGRVFKSHLFCTPTIVSCDQELNHFILQNEERL 103
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 34.3 bits (75), Expect = 0.082
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 359 EGPYELHSELKEDAVKVFDASFEKLNFNDGAASAAA-INKWVESKTNDRIKXXXXXXXXX 535
+ Y L ++ V + + ++F + A IN WV T + I
Sbjct: 25 DASYSLKPAYRDAIVGTYKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPESQS 84
Query: 536 XXXRVVLVNALYFKGMW 586
R V+ NA+YFKG W
Sbjct: 85 VDTRHVVGNAIYFKGEW 101
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 398 AVKVFDASFEKLNFNDGAASAA-AINKWVESKTNDRIKXXXXXXXXXXXXRVVLVNALYF 574
A V+ ++ +K +F + A IN WV+ T + +VL +ALYF
Sbjct: 122 AGNVYGSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYF 181
Query: 575 KGMW 586
+G W
Sbjct: 182 RGRW 185
>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
Length = 294
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 218 DPAHEELLTSLDIPNDDCIRSS----FTSITSNLKSIQGITLNIANKVY-LKEGPYELHS 382
D E L SLD C RS + I +K I+G + +Y + EGP+E+H
Sbjct: 52 DGDSEALALSLDQSQGSCFRSREKYLYVQIDVEIKLIEGDSAGTVCTIYTISEGPWEIHD 111
Query: 383 EL 388
E+
Sbjct: 112 EI 113
>11_01_0771 + 6453130-6454488
Length = 452
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 467 INKWVESKTNDRIKXXXXXXXXXXXXRVVLVNALYFKGMW 586
IN W T I VVL NA+YFKG W
Sbjct: 177 INAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKW 216
>04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911
Length = 691
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 504 ILSFVL-LSTHLLIAAADAAPSLKFNFSKEASNT 406
+LS +L S HL+ AA A P FNFS + +T
Sbjct: 16 LLSMLLDASDHLIAGAAAAPPVFSFNFSADHPST 49
>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
Length = 346
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 447 PSLKFNFSKEASNTLTASSFSSECSSYG 364
PSL ++ A +S SSECSSYG
Sbjct: 108 PSLAGSYRARAPGPHATTSSSSECSSYG 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,569,232
Number of Sequences: 37544
Number of extensions: 221199
Number of successful extensions: 560
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -