Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_A17
         (423 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P06754 Cluster: Tropomyosin-1, isoforms 9A/A/B; n=38; B...    68   7e-11
UniRef50_Q9ZE64 Cluster: Putative uncharacterized protein RP083;...    32   5.6  
UniRef50_P49454 Cluster: Centromere protein F; n=15; Eutheria|Re...    31   7.4  
UniRef50_Q9CI97 Cluster: Prophage pi1 protein 34, terminase larg...    31   9.7  

>UniRef50_P06754 Cluster: Tropomyosin-1, isoforms 9A/A/B; n=38;
           Bilateria|Rep: Tropomyosin-1, isoforms 9A/A/B -
           Drosophila melanogaster (Fruit fly)
          Length = 339

 Score = 68.1 bits (159), Expect = 7e-11
 Identities = 30/38 (78%), Positives = 35/38 (92%)
 Frame = +2

Query: 308 QKCIKMTTNMQQGTILDVLKKKMRQTKEEMEKYQDECE 421
           +K  KMTT++ QGT+LDVLKKKMRQTKEEMEKY+DECE
Sbjct: 82  KKTTKMTTSIPQGTLLDVLKKKMRQTKEEMEKYKDECE 119


>UniRef50_Q9ZE64 Cluster: Putative uncharacterized protein RP083;
           n=2; Rickettsia|Rep: Putative uncharacterized protein
           RP083 - Rickettsia prowazekii
          Length = 521

 Score = 31.9 bits (69), Expect = 5.6
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 308 QKCIKMTTNMQQGTILDVLKKKMRQTKEEMEKYQDE 415
           +KC++ TT  QQG ILDVL    R  K  + K + E
Sbjct: 142 EKCLEETTPEQQGMILDVLTNNTRIRKALITKIERE 177


>UniRef50_P49454 Cluster: Centromere protein F; n=15; Eutheria|Rep:
            Centromere protein F - Homo sapiens (Human)
          Length = 3210

 Score = 31.5 bits (68), Expect = 7.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 320  KMTTNMQQGTILDVLKKKMRQTKEEMEKYQDEC 418
            ++ T  ++ T LD L +KM++  +E+E +Q EC
Sbjct: 2062 ELDTMSKKTTALDQLSEKMKEKTQELESHQSEC 2094


>UniRef50_Q9CI97 Cluster: Prophage pi1 protein 34, terminase large
           subunit; n=2; root|Rep: Prophage pi1 protein 34,
           terminase large subunit - Lactococcus lactis subsp.
           lactis (Streptococcus lactis)
          Length = 604

 Score = 31.1 bits (67), Expect = 9.7
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +3

Query: 66  LLDITLIFSWCLFLILK*KLFVNTKLSVKFGGGHFIRRL 182
           L+D   +F+W L  I K +L V   L  ++G G+FIRRL
Sbjct: 446 LIDEDEVFNWMLNFIEKNELRVKAILYDQWGTGNFIRRL 484


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,317,707
Number of Sequences: 1657284
Number of extensions: 6670286
Number of successful extensions: 13521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13520
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)